Difference between revisions of "TCA"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9659 RXN-9659] == * direction: ** LEFT-TO-RIGHT * common name: ** trans oct-2-enoyl-[acp] reduc...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] ** [http://m...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9659 RXN-9659] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** trans oct-2-enoyl-[acp] reductase
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** TCA cycle I (prokaryotic)
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.9 EC-1.3.1.9]
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* Synonym(s):
 
* Synonym(s):
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** tricarboxylic acid cycle
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** citric acid cycle
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** Krebs cycle
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** Szent-Gyorgyi-Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''10''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[2-Octenoyl-ACPs]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Octanoyl-ACPs]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 a trans oct-2-enoyl-[acp][c] '''=>''' 1 NAD+[c] '''+''' 1 an octanoyl-[acp][c]
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*** [[Tiso_gene_13007]]
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** 3 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_10778]]
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[synechocystis]]
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* [[ACONITATEHYDR-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_13007]]
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** 2 reconstruction source(s) associated:
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** '''31''' reactions found over '''31''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[annotation-experimental_annotation]]
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* [[orthology]]:
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* [[CITSYN-RXN]]
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** [[pantograph]]:
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** 4 associated gene(s):
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*** [[synechocystis]]
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*** [[Tiso_gene_18030]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_9601]]
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*** [[Tiso_gene_9603]]
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*** [[Tiso_gene_9602]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2OXOGLUTARATEDEH-RXN 2OXOGLUTARATEDEH-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-ACCEPTOR-RXN MALATE-DEHYDROGENASE-ACCEPTOR-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14971 RXN-14971]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: common name=trans oct-2-enoyl-[acp] reductase}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TCA TCA]
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{{#set: ec number=EC-1.3.1.9}}
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* ARACYC:
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{{#set: gene associated=Tiso_gene_10778}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=TCA TCA]
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{{#set: in pathway=PWY-5971}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction category=orthology}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=TCA cycle I (prokaryotic)}}
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{{#set: reconstruction source=synechocystis|esiliculosus}}
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{{#set: common name=tricarboxylic acid cycle|citric acid cycle|Krebs cycle|Szent-Gyorgyi-Krebs cycle}}
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{{#set: reaction found=7}}
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{{#set: total reaction=10}}
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{{#set: completion rate=70.0}}

Latest revision as of 19:14, 21 March 2018

Pathway TCA

  • taxonomic range:
  • common name:
    • TCA cycle I (prokaryotic)
  • Synonym(s):
    • tricarboxylic acid cycle
    • citric acid cycle
    • Krebs cycle
    • Szent-Gyorgyi-Krebs cycle

Reaction(s) found

7 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TCA&oldid=40378"