Difference between revisions of "Tiso gene 5857"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HPPD HPPD] == * direction: ** LEFT-TO-RIGHT * common name: ** p-hydroxyphenylpyruvate dioxygenase *...")
(Created page with "Category:Gene == Gene Tiso_gene_5857 == * right end position: ** 2702 * transcription direction: ** NEGATIVE * left end position: ** 56 * centisome position: ** 0.43583158...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HPPD HPPD] ==
+
== Gene Tiso_gene_5857 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 2702
−
* common name:
+
* transcription direction:
−
** p-hydroxyphenylpyruvate dioxygenase
+
** NEGATIVE
 +
* left end position:
 +
** 56
 +
* centisome position:
 +
** 0.43583158   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
−
** 1.0 [[OXYGEN-MOLECULE]][c] '''+''' 1.0 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''=>''' 1.0 [[HOMOGENTISATE]][c] '''+''' 1.0 [[CARBON-DIOXIDE]][c]
+
** Source: [[orthology-athaliana]]
−
* With common name(s):
+
** Source: [[orthology-creinhardtii]]
−
** 1.0 oxygen[c] '''+''' 1.0 4-hydroxyphenylpyruvate[c] '''=>''' 1.0 homogentisate[c] '''+''' 1.0 CO2[c]
+
* Reaction: [[HACD5]]
−
 
+
** Source: [[orthology-creinhardtii]]
−
== Genes associated with this reaction  ==
+
* Reaction: [[HACD5m]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[orthology-creinhardtii]]
−
* Gene: [[Tiso_gene_18328]]
+
* Reaction: [[HBCHL]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[HBCHLm]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[HBCO]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[HMNOS]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[METHYLACYLYLCOA-HYDROXY-RXN]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[OHACYL-COA-DEHYDROG-RXN]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[PEROXID-RXN]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-10698]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-10702]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-10703]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-11245]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-11662]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-11667]]
 +
** Source: [[orthology-athaliana]]
 +
* Reaction: [[RXN-12490]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12507]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12570]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-12705]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-12750]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-14240]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-14266]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-14271]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[RXN-14275]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-15288]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-16133]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17777]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17781]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17786]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17790]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17793]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17794]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17797]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17798]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-2425]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-6383]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
−
== Pathways  ==
 
−
== Reconstruction information  ==
 
−
* Category: [[orthology]]
 
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
−
*** Tool: [[pantograph]]
+
* Reaction: [[RXN-8635]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN-905]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN0-2044]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[TIGLYLCOA-HYDROXY-RXN]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways associated ==
 +
* [[PWY-6920]]
 +
* [[P162-PWY]]
 +
* [[PWY-5177]]
 +
* [[PWY-6583]]
 +
* [[VALDEG-PWY]]
 +
* [[PWY-6883]]
 +
* [[PWY-7656]]
 +
* [[PWY-5136]]
 +
* [[PWY-7778]]
 +
* [[PWY-7779]]
 +
* [[PWY-7574]]
 +
* [[PWY-7094]]
 +
* [[PWY-7654]]
 +
* [[P3-PWY]]
 +
* [[PWY66-391]]
 +
* [[PWY-5789]]
 +
* [[PWY-5461]]
 +
* [[FAO-PWY]]
 +
* [[CENTFERM-PWY]]
 +
* [[PWY-6945]]
 +
* [[PWY0-321]]
 +
* [[PWY-5743]]
 +
* [[ILEUDEG-PWY]]
 +
* [[PWY-5744]]
 +
* [[PWY-7007]]
 +
* [[PWY-6435]]
 +
* [[PWY-7214]]
 +
* [[PWY-7216]]
 +
* [[PWY-1361]]
 +
* [[PWY-5109]]
 +
* [[PWY-7445]]
 +
* [[PWY-6946]]
 +
* [[PWY-81]]
 +
* [[PWY-6944]]
 +
* [[PWY-735]]
 +
* [[PWY-7401]]
 +
* [[PWY-6863]]
 +
* [[PWY-3941]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=2702}}
−
{{#set: common name=p-hydroxyphenylpyruvate dioxygenase}}
+
{{#set: transcription direction=NEGATIVE}}
−
{{#set: gene associated=Tiso_gene_18328}}
+
{{#set: left end position=56}}
−
{{#set: in pathway=}}
+
{{#set: centisome position=0.43583158    }}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reaction associated=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN|HACD5|HACD5m|HBCHL|HBCHLm|HBCO|HMNOS|METHYLACYLYLCOA-HYDROXY-RXN|OHACYL-COA-DEHYDROG-RXN|PEROXID-RXN|RXN-10698|RXN-10702|RXN-10703|RXN-11245|RXN-11662|RXN-11667|RXN-12490|RXN-12507|RXN-12570|RXN-12705|RXN-12750|RXN-14240|RXN-14266|RXN-14271|RXN-14275|RXN-15288|RXN-16133|RXN-17777|RXN-17781|RXN-17786|RXN-17790|RXN-17793|RXN-17794|RXN-17797|RXN-17798|RXN-2425|RXN-6383|RXN-8635|RXN-905|RXN0-2044|TIGLYLCOA-HYDROXY-RXN}}
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
{{#set: pathway associated=PWY-6920|P162-PWY|PWY-5177|PWY-6583|VALDEG-PWY|PWY-6883|PWY-7656|PWY-5136|PWY-7778|PWY-7779|PWY-7574|PWY-7094|PWY-7654|P3-PWY|PWY66-391|PWY-5789|PWY-5461|FAO-PWY|CENTFERM-PWY|PWY-6945|PWY0-321|PWY-5743|ILEUDEG-PWY|PWY-5744|PWY-7007|PWY-6435|PWY-7214|PWY-7216|PWY-1361|PWY-5109|PWY-7445|PWY-6946|PWY-81|PWY-6944|PWY-735|PWY-7401|PWY-6863|PWY-3941}}
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 20:14, 21 March 2018

Gene Tiso_gene_5857

  • right end position:
    • 2702
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 56
  • centisome position:
    • 0.43583158
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5857&oldid=40388"