Difference between revisions of "RXN-11065"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] == * direction: ** REVERSIBLE * common name: ** rab_proteins_geranylgeranyltrans...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11065 RXN-11065] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-lactamase * ec number:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11065 RXN-11065] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** rab_proteins_geranylgeranyltransferase_component_a_2
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** beta-lactamase
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** protein_geranylgeranyltransferase_type_ii
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* ec number:
 
* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.60 EC-2.5.1.60]
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** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
−
** [http://enzyme.expasy.org/EC/2.5.1.59 EC-2.5.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PROT-CYS]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[S-GERANYLGERANYL-PROTEIN]][c]
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** 3 [[WATER]][c] '''+''' 2 [[CPD-12259]][c] '''=>''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-12230]][c] '''+''' 4 [[D-ALANINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 geranylgeranyl diphosphate[c] '''+''' 1 a [protein]-L-cysteine[c] '''<=>''' 1 diphosphate[c] '''+''' 1 a [protein]-S-geranylgeranyl-L-cysteine[c]
+
** 3 H2O[c] '''+''' 2 a peptidoglycan dimer (S. aureus)[c] '''=>''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c] '''+''' 1 H+[c] '''+''' 1 a peptidoglycan with D,D cross-link (S. aureus)[c] '''+''' 4 D-alanine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18627]]
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* Gene: [[Tiso_gene_18870]]
−
** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: EC-NUMBER
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* [[Tiso_gene_18628]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_18785]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]
 +
** '''3''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
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** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
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*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
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{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=rab_proteins_geranylgeranyltransferase_component_a_2}}
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{{#set: common name=beta-lactamase}}
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{{#set: common name=protein_geranylgeranyltransferase_type_ii}}
+
{{#set: ec number=EC-3.4.16.4}}
−
{{#set: ec number=EC-2.5.1.60}}
+
{{#set: gene associated=Tiso_gene_18870}}
−
{{#set: ec number=EC-2.5.1.59}}
+
{{#set: in pathway=PWY-5265}}
−
{{#set: gene associated=Tiso_gene_18627|Tiso_gene_18628|Tiso_gene_18785}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 19:15, 21 March 2018

Reaction RXN-11065

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-lactamase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 3 H2O[c] + 2 a peptidoglycan dimer (S. aureus)[c] => 1 di-trans,octa-cis-undecaprenyl diphosphate[c] + 1 H+[c] + 1 a peptidoglycan with D,D cross-link (S. aureus)[c] + 4 D-alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5265, peptidoglycan biosynthesis II (staphylococci): PWY-5265
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11065&oldid=40437"