Difference between revisions of "Tiso gene 13305"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3DJ-11230 RXN3DJ-11230] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
(Created page with "Category:Gene == Gene Tiso_gene_13305 == * right end position: ** 6380 * transcription direction: ** NEGATIVE * left end position: ** 3486 * centisome position: ** 54.5710...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3DJ-11230 RXN3DJ-11230] ==
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== Gene Tiso_gene_13305 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6380
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.3.2 EC-4.3.2]
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** NEGATIVE
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* left end position:
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** 3486
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* centisome position:
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** 54.571068   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.2.1.21-RXN]]
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** 1 [[CPD3DJ-11366]][c] '''=>''' 1 [[CPD-292]][c] '''+''' 1 [[PHOSPHORYL-ETHANOLAMINE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 sphingosine 1-phosphate[c] '''=>''' 1 (2E)-hexadecenal[c] '''+''' 1 O-phosphoethanolamine[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-10769]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_105]]
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*** Assignment: ec-number
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-10773]]
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* [[PWY3DJ-11470]], sphingosine and sphingosine-1-phosphate metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-11470 PWY3DJ-11470]
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** Source: [[annotation-in-silico_annotation]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[annotation-experimental_annotation]]
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* [[orthology]]:
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*** Assignment: ec-number
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** [[pantograph]]:
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* Reaction: [[RXN-13602]]
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*** [[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[esiliculosus]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-13603]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-14179]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5341]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8036]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9674]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-3121]]
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* [[PWY-6002]]
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* [[PWY-6788]]
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* [[PWY-5176]]
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* [[PWY-7092]]
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* [[PWY-7091]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6380}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33508 33508]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3486}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06516 R06516]
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{{#set: centisome position=54.571068    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3.2.1.21-RXN|RXN-10769|RXN-10773|RXN-13602|RXN-13603|RXN-14179|RXN-5341|RXN-8036|RXN-9674}}
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{{#set: ec number=EC-4.3.2}}
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{{#set: pathway associated=PWY-3121|PWY-6002|PWY-6788|PWY-5176|PWY-7092|PWY-7091}}
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{{#set: gene associated=Tiso_gene_105}}
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{{#set: in pathway=PWY3DJ-11470}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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Latest revision as of 19:15, 21 March 2018

Gene Tiso_gene_13305

  • right end position:
    • 6380
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3486
  • centisome position:
    • 54.571068
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13305&oldid=40458"