Difference between revisions of "ARGINASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGINASE-RXN ARGINASE-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGINASE-RXN ARGINASE-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
** REVERSIBLE
−
* common name:
+
* ec number:
−
** glycolysis V (Pyrococcus)
+
** [http://enzyme.expasy.org/EC/3.5.3.1 EC-3.5.3.1]
 
* Synonym(s):
 
* Synonym(s):
−
** archaeal Embden-Meyerhof pathway
 
−
** archaeal Embden-Meyerhof-Parnas pathway
 
−
** archaeal EMP pathway
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''6''' reactions found over '''9''' reactions in the full pathway
+
* With identifiers:
−
* [[2PGADEHYDRAT-RXN]]
+
** 1 [[WATER]][c] '''+''' 1 [[ARG]][c] '''<=>''' 1 [[UREA]][c] '''+''' 1 [[L-ORNITHINE]][c]
−
** 4 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_14718]]
+
** 1 H2O[c] '''+''' 1 L-arginine[c] '''<=>''' 1 urea[c] '''+''' 1 L-ornithine[c]
−
*** [[Tiso_gene_8720]]
+
 
−
*** [[Tiso_gene_5619]]
+
== Genes associated with this reaction  ==
−
*** [[Tiso_gene_13317]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 7 reconstruction source(s) associated:
+
* Gene: [[Tiso_gene_4415]]
−
*** [[annotation-experimental_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** [[orthology-esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[annotation-in-silico_annotation]]
+
== Pathways  ==
−
*** [[orthology-athaliana]]
+
* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
−
*** [[orthology-synechocystis]]
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
*** [[manual-primary_network]]
+
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
−
*** [[orthology-creinhardtii]]
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[3PGAREARR-RXN]]
+
* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
−
** 16 associated gene(s):
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
*** [[Tiso_gene_2667]]
+
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
−
*** [[Tiso_gene_9922]]
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
*** [[Tiso_gene_15048]]
+
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
−
*** [[Tiso_gene_2841]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
*** [[Tiso_gene_14530]]
+
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
−
*** [[Tiso_gene_16754]]
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
*** [[Tiso_gene_2365]]
+
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
−
*** [[Tiso_gene_16271]]
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
*** [[Tiso_gene_5468]]
+
== Reconstruction information  ==
−
*** [[Tiso_gene_20311]]
+
* Category: [[orthology]]
−
*** [[Tiso_gene_14664]]
+
** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_15391]]
+
*** Tool: [[pantograph]]
−
*** [[Tiso_gene_14212]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_10516]]
+
*** Tool: [[pantograph]]
−
*** [[Tiso_gene_9923]]
+
* Category: [[annotation]]
−
*** [[Tiso_gene_7201]]
+
** Source: [[annotation-experimental_annotation]]
−
** 7 reconstruction source(s) associated:
+
*** Tool: [[pathwaytools]]
−
*** [[annotation-experimental_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[orthology-esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[F16ALDOLASE-RXN]]
+
−
** 6 associated gene(s):
+
−
*** [[Tiso_gene_65]]
+
−
*** [[Tiso_gene_9119]]
+
−
*** [[Tiso_gene_9179]]
+
−
*** [[Tiso_gene_12272]]
+
−
*** [[Tiso_gene_14568]]
+
−
*** [[Tiso_gene_9118]]
+
−
** 5 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-experimental_annotation]]
+
−
* [[PEPDEPHOS-RXN]]
+
−
** 4 associated gene(s):
+
−
*** [[Tiso_gene_14504]]
+
−
*** [[Tiso_gene_18206]]
+
−
*** [[Tiso_gene_974]]
+
−
*** [[Tiso_gene_14505]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
* [[PGLUCISOM-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_19480]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[TRIOSEPISOMERIZATION-RXN]]
+
−
** 4 associated gene(s):
+
−
*** [[Tiso_gene_20000]]
+
−
*** [[Tiso_gene_19961]]
+
−
*** [[Tiso_gene_10646]]
+
−
*** [[Tiso_gene_19962]]
+
−
** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17001 RXN-17001]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2157}}
+
* RHEA:
−
{{#set: common name=glycolysis V (Pyrococcus)}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20569 20569]
−
{{#set: common name=archaeal Embden-Meyerhof pathway|archaeal Embden-Meyerhof-Parnas pathway|archaeal EMP pathway}}
+
* LIGAND-RXN:
−
{{#set: reaction found=6}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00551 R00551]
−
{{#set: total reaction=9}}
+
* UNIPROT:
−
{{#set: completion rate=67.0}}
+
** [http://www.uniprot.org/uniprot/P05089 P05089]
 +
** [http://www.uniprot.org/uniprot/P07824 P07824]
 +
** [http://www.uniprot.org/uniprot/P40906 P40906]
 +
** [http://www.uniprot.org/uniprot/Q7M0Z3 Q7M0Z3]
 +
** [http://www.uniprot.org/uniprot/P14012 P14012]
 +
** [http://www.uniprot.org/uniprot/P37818 P37818]
 +
** [http://www.uniprot.org/uniprot/P49900 P49900]
 +
** [http://www.uniprot.org/uniprot/P39138 P39138]
 +
** [http://www.uniprot.org/uniprot/P53608 P53608]
 +
** [http://www.uniprot.org/uniprot/P72703 P72703]
 +
** [http://www.uniprot.org/uniprot/O68051 O68051]
 +
** [http://www.uniprot.org/uniprot/O49046 O49046]
 +
** [http://www.uniprot.org/uniprot/O76895 O76895]
 +
** [http://www.uniprot.org/uniprot/P33280 P33280]
 +
** [http://www.uniprot.org/uniprot/Q10066 Q10066]
 +
** [http://www.uniprot.org/uniprot/P00812 P00812]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-3.5.3.1}}
 +
{{#set: gene associated=Tiso_gene_4415}}
 +
{{#set: in pathway=ARGASEDEG-PWY|PWY-6922|ARG-PRO-PWY|ARG-GLU-PWY|PWY-4984|PWY-6305|CITRULBIO-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:15, 21 March 2018

Reaction ARGINASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-arginine[c] <=> 1 urea[c] + 1 L-ornithine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6922, L-Nδ-acetylornithine biosynthesis: PWY-6922
    • 6 reactions found over 7 reactions in the full pathway
  • ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway): ARG-PRO-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • ARG-GLU-PWY, L-arginine degradation VII (arginase 3 pathway): ARG-GLU-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ARGINASE-RXN&oldid=40484"