Difference between revisions of "Tiso gene 16305"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATE-CARBOXYLASE-RXN PYRUVATE-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_16305 == * right end position: ** 4194 * transcription direction: ** NEGATIVE * left end position: ** 56 * centisome position: ** 0.6867795...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATE-CARBOXYLASE-RXN PYRUVATE-CARBOXYLASE-RXN] ==
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== Gene Tiso_gene_16305 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4194
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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** Pyruvate carboxylase
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* left end position:
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* ec number:
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** 56
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** [http://enzyme.expasy.org/EC/6.4.1.1 EC-6.4.1.1]
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* centisome position:
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** 0.6867795   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GBDP]]
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** 1 [[PYRUVATE]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[GDPPYPHOSKIN-RXN]]
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** 1 pyruvate[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 oxaloacetate[c] '''+''' 1 phosphate[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[GTPPYPHOSKIN-RXN]]
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* [[Tiso_gene_15145]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***AUTOMATED-NAME-MATCH
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== Pathways associated ==
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* [[Tiso_gene_2812]]
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* [[PPGPPMET-PWY]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15144]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
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** '''8''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6146 PWY-6146]
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** '''7''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4194}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20844 20844]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=56}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00344 R00344]
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{{#set: centisome position=0.6867795    }}
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* UNIPROT:
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{{#set: reaction associated=GBDP|GDPPYPHOSKIN-RXN|GTPPYPHOSKIN-RXN}}
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** [http://www.uniprot.org/uniprot/Q05920 Q05920]
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{{#set: pathway associated=PPGPPMET-PWY}}
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** [http://www.uniprot.org/uniprot/Q9PNQ4 Q9PNQ4]
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** [http://www.uniprot.org/uniprot/P95127 P95127]
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** [http://www.uniprot.org/uniprot/Q9PP00 Q9PP00]
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** [http://www.uniprot.org/uniprot/Q9CHQ7 Q9CHQ7]
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** [http://www.uniprot.org/uniprot/Q9KWU4 Q9KWU4]
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** [http://www.uniprot.org/uniprot/P11498 P11498]
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** [http://www.uniprot.org/uniprot/P52873 P52873]
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** [http://www.uniprot.org/uniprot/P11154 P11154]
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** [http://www.uniprot.org/uniprot/P32327 P32327]
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** [http://www.uniprot.org/uniprot/O17732 O17732]
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** [http://www.uniprot.org/uniprot/Q9UUE1 Q9UUE1]
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** [http://www.uniprot.org/uniprot/Q16921 Q16921]
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** [http://www.uniprot.org/uniprot/Q9XBJ1 Q9XBJ1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=Pyruvate carboxylase}}
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{{#set: ec number=EC-6.4.1.1}}
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{{#set: gene associated=Tiso_gene_15145|Tiso_gene_2812|Tiso_gene_15144}}
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{{#set: in pathway=PWY-6142|PWY-6146|PWY-5750|P42-PWY|PWY66-399}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:15, 21 March 2018

Gene Tiso_gene_16305

  • right end position:
    • 4194
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 56
  • centisome position:
    • 0.6867795
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16305&oldid=40489"