Difference between revisions of "Tiso gene 5424"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.1.1.18-RXN 5.1.1.18-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
(Created page with "Category:Gene == Gene Tiso_gene_5424 == * right end position: ** 9247 * transcription direction: ** NEGATIVE * left end position: ** 7226 * centisome position: ** 53.57752...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.1.1.18-RXN 5.1.1.18-RXN] ==
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== Gene Tiso_gene_5424 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9247
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/5.1.1.18 EC-5.1.1.18]
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** NEGATIVE
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* left end position:
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** 7226
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* centisome position:
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** 53.57752   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.2.1.31-RXN]]
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** 1 [[SER]][c] '''=>''' 1 [[D-SERINE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 L-serine[c] '''=>''' 1 D-serine[c]
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* Reaction: [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ALCOHOL-DEHYDROG-RXN]]
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* [[Tiso_gene_17207]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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== Pathways ==
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* Reaction: [[ALLYSINE-DEHYDROG-RXN]]
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* [[PWY-6455]], vancomycin resistance II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6455 PWY-6455]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-6196]], D-serine metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6196 PWY-6196]
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* Reaction: [[L-IDITOL-2-DEHYDROGENASE-RXN]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[orthology]]
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* Reaction: [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10781]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10855]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10911]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-10915]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12448]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12560]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-13198]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-13279]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5424]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-5901]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7644]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7657]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7693]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7694]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7700]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7706]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN3O-4113]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN66-478]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY66-21]]
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* [[PWY-6587]]
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* [[PWY-7111]]
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* [[FERMENTATION-PWY]]
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* [[PWY-5676]]
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* [[PWY-5082]]
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* [[PWY-7118]]
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* [[PWY-7013]]
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* [[PWY-3162]]
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* [[PWY-5751]]
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* [[PWY-6342]]
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* [[PWY1-3]]
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* [[P161-PWY]]
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* [[ETOH-ACETYLCOA-ANA-PWY]]
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* [[PWY-6871]]
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* [[PWY-7396]]
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* [[PWY-5057]]
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* [[PWY-5741]]
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* [[PWY-5076]]
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* [[PWY-6333]]
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* [[PWY-5486]]
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* [[PWY-5079]]
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* [[PWY-5078]]
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* [[PWY-6313]]
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* [[PWY66-425]]
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* [[PWY-5480]]
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* [[PWY3O-4108]]
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* [[PWY-7216]]
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* [[PWY-6802]]
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* [[LYSINE-DEG1-PWY]]
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* [[P122-PWY]]
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* [[PWY66-389]]
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* [[PWY4LZ-257]]
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* [[PWY-4101]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9247}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10980 10980]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=7226}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00589 R00589]
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{{#set: centisome position=53.57752    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=1.2.1.31-RXN|ALCOHOL-DEHYDROG-GENERIC-RXN|ALCOHOL-DEHYDROG-RXN|ALLYSINE-DEHYDROG-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-10781|RXN-10855|RXN-10911|RXN-10915|RXN-12448|RXN-12560|RXN-13198|RXN-13279|RXN-5424|RXN-5901|RXN-7644|RXN-7657|RXN-7693|RXN-7694|RXN-7700|RXN-7706|RXN3O-4113|RXN66-478}}
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{{#set: ec number=EC-5.1.1.18}}
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{{#set: pathway associated=PWY66-21|PWY-6587|PWY-7111|FERMENTATION-PWY|PWY-5676|PWY-5082|PWY-7118|PWY-7013|PWY-3162|PWY-5751|PWY-6342|PWY1-3|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|PWY-6871|PWY-7396|PWY-5057|PWY-5741|PWY-5076|PWY-6333|PWY-5486|PWY-5079|PWY-5078|PWY-6313|PWY66-425|PWY-5480|PWY3O-4108|PWY-7216|PWY-6802|LYSINE-DEG1-PWY|P122-PWY|PWY66-389|PWY4LZ-257|PWY-4101}}
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{{#set: gene associated=Tiso_gene_17207}}
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{{#set: in pathway=PWY-6455|PWY-6196}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-creinhardtii}}
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−
{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:15, 21 March 2018

Gene Tiso_gene_5424

  • right end position:
    • 9247
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 7226
  • centisome position:
    • 53.57752
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5424&oldid=40494"