Difference between revisions of "PWY-5723"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12490 RXN-12490] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-5...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12490 RXN-12490] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
 
* common name:
 
* common name:
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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** Rubisco shunt
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** 3-hydroxyacyl-_dehydrogenase
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** hydroxyacyl-coenzyme_a_mitochondrial
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''10''' reactions in the full pathway
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** 1 [[CPD0-2244]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD0-2123]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 (S)-3-hydroxydecanoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 3-oxodecanoyl-CoA[c]
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*** [[Tiso_gene_11559]]
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*** [[Tiso_gene_5008]]
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== Genes associated with this reaction  ==
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** 5 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14262]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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* [[2PGADEHYDRAT-RXN]]
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* [[Tiso_gene_5857]]
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** 4 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_8720]]
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***EC-NUMBER
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*** [[Tiso_gene_14718]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_5619]]
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***EC-NUMBER
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*** [[Tiso_gene_13317]]
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** [[pantograph]]-[[athaliana]]
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** 7 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_18839]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[manual-primary_network]]
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* [[Tiso_gene_14027]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* [[2TRANSKETO-RXN]]
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* [[Tiso_gene_14026]]
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** 2 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_11559]]
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***EC-NUMBER
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*** [[Tiso_gene_5008]]
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** EXPERIMENTAL_ANNOTATION
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** 5 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-athaliana]]
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* [[Tiso_gene_18838]]
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*** [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
−
== Pathways  ==
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* [[3PGAREARR-RXN]]
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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** 16 associated gene(s):
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** [[Tiso_gene_15048]]
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== Reconstruction information  ==
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*** [[Tiso_gene_7201]]
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* [[orthology]]:
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*** [[Tiso_gene_9922]]
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** [[pantograph]]:
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*** [[Tiso_gene_2841]]
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*** [[creinhardtii]]
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*** [[Tiso_gene_14530]]
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*** [[athaliana]]
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*** [[Tiso_gene_16754]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_2365]]
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* [[annotation]]:
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*** [[Tiso_gene_16271]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_5468]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_20311]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
 +
*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[PHOSPHORIBULOKINASE-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_17637]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_18217]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_12199]]
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** 2 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
 +
* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_19140]]
 +
*** [[Tiso_gene_4754]]
 +
*** [[Tiso_gene_10879]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[TRANSALDOL-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_17601]]
 +
*** [[Tiso_gene_1831]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-58024}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31188 31188]
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{{#set: common name=Rubisco shunt}}
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* LIGAND-RXN:
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{{#set: reaction found=10}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04743 R04743]
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{{#set: total reaction=10}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=100.0}}
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{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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−
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
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−
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
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−
{{#set: ec number=EC-1.1.1.35}}
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−
{{#set: gene associated=Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_18839|Tiso_gene_14027|Tiso_gene_14026|Tiso_gene_18838}}
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−
{{#set: in pathway=PWY-7094}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:16, 21 March 2018

Pathway PWY-5723

  • taxonomic range:
  • common name:
    • Rubisco shunt
  • Synonym(s):

Reaction(s) found

10 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5723&oldid=40506"