Difference between revisions of "PWY-5070"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-I-RXN GTP-CYCLOHYDRO-I-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http:/...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-I-RXN GTP-CYCLOHYDRO-I-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/3.5.4.16 EC-3.5.4.16]
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** gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)
 
* Synonym(s):
 
* Synonym(s):
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** gibberellin biosynthesis I (late C-3 hydroxylation)
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** gibberellin biosynthesis I (late C-13 hydroxylation)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''7''' reactions in the full pathway
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** 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[PROTON]][c]
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* [[RXN1F-162]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 GTP[c] '''+''' 1 H2O[c] '''=>''' 1 formate[c] '''+''' 1 7,8-dihydroneopterin 3'-triphosphate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_3330]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_12736]]
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* [[RXN1F-163]]
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** [[pantograph]]-[[synechocystis]]
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** 1 associated gene(s):
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_3330]]
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** [[pantograph]]-[[creinhardtii]]
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[orthology-athaliana]]
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* [[PWY-5663]], tetrahydrobiopterin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5663 PWY-5663]
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*** [[orthology-esiliculosus]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[RXN1F-165]]
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* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
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** 1 associated gene(s):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_3330]]
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* [[PWY0-1433]], tetrahydromonapterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1433 PWY0-1433]
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** 2 reconstruction source(s) associated:
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** '''1''' reactions found over '''4''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7442 PWY-7442]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[PWY-5664]], tetrahydrobiopterin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5664 PWY-5664]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6523 RXN-6523]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6541 RXN-6541]
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* [[PWY-6703]], preQ0 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6703 PWY-6703]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-164 RXN1F-164]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-99 RXN1F-99]
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* [[PWY-6983]], tetrahydrobiopterin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6983 PWY-6983]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5070 PWY-5070]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00424 R00424]
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{{#set: common name=gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)}}
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* UNIPROT:
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{{#set: common name=gibberellin biosynthesis I (late C-3 hydroxylation)|gibberellin biosynthesis I (late C-13 hydroxylation)}}
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** [http://www.uniprot.org/uniprot/P19465 P19465]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P22288 P22288]
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/P43866 P43866]
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{{#set: completion rate=43.0}}
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** [http://www.uniprot.org/uniprot/P51594 P51594]
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** [http://www.uniprot.org/uniprot/P64207 P64207]
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** [http://www.uniprot.org/uniprot/Q9CGE3 Q9CGE3]
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** [http://www.uniprot.org/uniprot/O66603 O66603]
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** [http://www.uniprot.org/uniprot/P56462 P56462]
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** [http://www.uniprot.org/uniprot/P0A6T5 P0A6T5]
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** [http://www.uniprot.org/uniprot/P50141 P50141]
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** [http://www.uniprot.org/uniprot/P30793 P30793]
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** [http://www.uniprot.org/uniprot/P51601 P51601]
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** [http://www.uniprot.org/uniprot/Q05915 Q05915]
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** [http://www.uniprot.org/uniprot/P51597 P51597]
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** [http://www.uniprot.org/uniprot/P51600 P51600]
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** [http://www.uniprot.org/uniprot/Q94465 Q94465]
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** [http://www.uniprot.org/uniprot/Q55759 Q55759]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-3.5.4.16}}
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{{#set: gene associated=Tiso_gene_12736}}
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{{#set: in pathway=PWY-5663|PWY-6147|PWY0-1433|PWY-7442|PWY-5664|PWY-6703|PWY-6983}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
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Latest revision as of 20:16, 21 March 2018

Pathway PWY-5070

  • taxonomic range:
  • common name:
    • gibberellin biosynthesis I (non C-3, non C-13 hydroxylation)
  • Synonym(s):
    • gibberellin biosynthesis I (late C-3 hydroxylation)
    • gibberellin biosynthesis I (late C-13 hydroxylation)

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5070&oldid=40511"