Difference between revisions of "RXN-12579"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6458 PWY-6458] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-31...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** zinc_finger_fyve_dom...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6458 PWY-6458] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12579 RXN-12579] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
−
** benzoyl-CoA biosynthesis
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** ORF
 +
** zinc_finger_fyve_domain-containing_protein
 +
** triacylglycerol_lipase
 +
** class_3_lipase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.1.3 EC-3.1.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** benzoyl-coenzyme A biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
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** [[RXN-2006]]
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** 1 [[Dietary-retinyl-esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CPD-13524]][c] '''+''' 1 [[PROTON]][c]
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== Reaction(s) not found ==
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* With common name(s):
−
* '''2''' reaction(s) not found
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** 1 a dietary all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 a long-chain fatty acid[c] '''+''' 1 all-trans-retinol[c] '''+''' 1 H+[c]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-2003 RXN-2003]
+
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-2002 RXN-2002]
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== Genes associated with this reaction ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_2108]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17612]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3215]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17639]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11437]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8902]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17613]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9140]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_288]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17614]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2109]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14063]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16817]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14062]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17143]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7915]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14109]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5716]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2983]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_905]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19184]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14064]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_906]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PLANTCYC : PWY-6458
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-3193}}
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{{#set: common name=ORF}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=zinc_finger_fyve_domain-containing_protein}}
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{{#set: common name=benzoyl-CoA biosynthesis}}
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{{#set: common name=triacylglycerol_lipase}}
−
{{#set: common name=benzoyl-coenzyme A biosynthesis}}
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{{#set: common name=class_3_lipase}}
−
{{#set: reaction found=1}}
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{{#set: ec number=EC-3.1.1.3}}
−
{{#set: reaction not found=2}}
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{{#set: gene associated=Tiso_gene_2108|Tiso_gene_17612|Tiso_gene_3215|Tiso_gene_17639|Tiso_gene_11437|Tiso_gene_8902|Tiso_gene_17613|Tiso_gene_9140|Tiso_gene_288|Tiso_gene_17614|Tiso_gene_2109|Tiso_gene_14063|Tiso_gene_16817|Tiso_gene_14062|Tiso_gene_17143|Tiso_gene_7915|Tiso_gene_14109|Tiso_gene_5716|Tiso_gene_2983|Tiso_gene_905|Tiso_gene_19184|Tiso_gene_14064|Tiso_gene_906}}
 +
{{#set: in pathway=PWY-6857}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:16, 21 March 2018

Reaction RXN-12579

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • zinc_finger_fyve_domain-containing_protein
    • triacylglycerol_lipase
    • class_3_lipase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12579&oldid=40529"