Difference between revisions of "Tiso gene 5008"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14240 RXN-14240] == * direction: ** LEFT-TO-RIGHT * common name: ** baicalein peroxidase ** asc...")
(Created page with "Category:Gene == Gene Tiso_gene_5008 == * right end position: ** 8090 * transcription direction: ** POSITIVE * left end position: ** 4987 * centisome position: ** 35.51994...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14240 RXN-14240] ==
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== Gene Tiso_gene_5008 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8090
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* common name:
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* transcription direction:
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** baicalein peroxidase
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** POSITIVE
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** ascorbate_peroxidase
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* left end position:
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** ORF
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** 4987
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.11.1.7 EC-1.11.1.7]
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** 35.519943   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1TRANSKETO-RXN]]
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** 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-12724]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[CPD-15172]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 hydrogen peroxide[c] '''+''' 1 baicalein[c] '''=>''' 2 H2O[c] '''+''' 1 6,7-dehydrobaicalein[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-athaliana]]
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* [[Tiso_gene_5857]]
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[2TRANSKETO-RXN]]
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* [[Tiso_gene_15962]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_15820]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-athaliana]]
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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* [[Tiso_gene_6431]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[R01067]]
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* [[Tiso_gene_20206]]
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[Tiso_gene_7067]]
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* [[PWY-6901]]
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** [[pantograph]]-[[esiliculosus]]
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* [[P124-PWY]]
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* [[Tiso_gene_19683]]
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* [[CALVIN-PWY]]
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** [[pantograph]]-[[esiliculosus]]
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* [[P21-PWY]]
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* [[Tiso_gene_16028]]
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* [[PWY-5723]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-1861]]
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* [[Tiso_gene_11016]]
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* [[P185-PWY]]
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** IN-SILICO_ANNOTATION
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* [[NONOXIPENT-PWY]]
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***EC-NUMBER
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* [[Tiso_gene_9359]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17551]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-7214]], baicalein degradation (hydrogen peroxide detoxification): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7214 PWY-7214]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=8090}}
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{{#set: common name=baicalein peroxidase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=ascorbate_peroxidase}}
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{{#set: left end position=4987}}
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{{#set: common name=ORF}}
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{{#set: centisome position=35.519943    }}
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{{#set: ec number=EC-1.11.1.7}}
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{{#set: reaction associated=1TRANSKETO-RXN|2TRANSKETO-RXN|R01067}}
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{{#set: gene associated=Tiso_gene_5857|Tiso_gene_15962|Tiso_gene_15820|Tiso_gene_6431|Tiso_gene_20206|Tiso_gene_7067|Tiso_gene_19683|Tiso_gene_16028|Tiso_gene_11016|Tiso_gene_9359|Tiso_gene_17551}}
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{{#set: pathway associated=PWY-6901|P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
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{{#set: in pathway=PWY-7214}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:16, 21 March 2018

Gene Tiso_gene_5008

  • right end position:
    • 8090
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4987
  • centisome position:
    • 35.519943
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5008&oldid=40584"