Difference between revisions of "PWY-1861"

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(Created page with "Category:Gene == Gene Tiso_gene_5008 == * left end position: ** 4987 * transcription direction: ** POSITIVE * right end position: ** 8090 * centisome position: ** 35.51994...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene Tiso_gene_5008 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] ==
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* left end position:
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* taxonomic range:
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** 4987
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* transcription direction:
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* common name:
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** POSITIVE
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** formaldehyde assimilation II (RuMP Cycle)
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* right end position:
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** 8090
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−
* centisome position:
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** 35.519943   
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* Synonym(s):
 
* Synonym(s):
 +
** ribulose monophosphate cycle
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** formaldehyde assimilation
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** RuMP pathway
  
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== Reactions associated ==
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== Reaction(s) found ==
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'''7''' reactions found over '''9''' reactions in the full pathway
 
* [[1TRANSKETO-RXN]]
 
* [[1TRANSKETO-RXN]]
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** in-silico_annotation
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** 2 associated gene(s):
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***ec-number
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*** [[Tiso_gene_11559]]
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** experimental_annotation
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*** [[Tiso_gene_5008]]
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***ec-number
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** 5 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
 
* [[2TRANSKETO-RXN]]
 
* [[2TRANSKETO-RXN]]
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** in-silico_annotation
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** 2 associated gene(s):
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***ec-number
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*** [[Tiso_gene_11559]]
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** experimental_annotation
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*** [[Tiso_gene_5008]]
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***ec-number
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** 5 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-creinhardtii]]
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* [[R01067]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-in-silico_annotation]]
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== Pathways associated ==
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* [[6PFRUCTPHOS-RXN]]
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* [[PWY-6901]]
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** 2 associated gene(s):
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* [[P124-PWY]]
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*** [[Tiso_gene_5733]]
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* [[CALVIN-PWY]]
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*** [[Tiso_gene_596]]
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* [[P21-PWY]]
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** 6 reconstruction source(s) associated:
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* [[PWY-5723]]
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*** [[annotation-experimental_annotation]]
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* [[PWY-1861]]
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*** [[orthology-esiliculosus]]
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* [[P185-PWY]]
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*** [[annotation-in-silico_annotation]]
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* [[NONOXIPENT-PWY]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18217]]
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** 5 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_19140]]
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*** [[Tiso_gene_4754]]
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*** [[Tiso_gene_10879]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[TRANSALDOL-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_17601]]
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*** [[Tiso_gene_1831]]
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** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R12-RXN R12-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=4987}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=formaldehyde assimilation II (RuMP Cycle)}}
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{{#set: right end position=8090}}
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{{#set: common name=ribulose monophosphate cycle|formaldehyde assimilation|RuMP pathway}}
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{{#set: centisome position=35.519943    }}
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{{#set: reaction found=7}}
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{{#set: reaction associated=1TRANSKETO-RXN|2TRANSKETO-RXN|R01067}}
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{{#set: total reaction=9}}
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{{#set: pathway associated=PWY-6901|P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
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{{#set: completion rate=78.0}}

Latest revision as of 19:16, 21 March 2018

Pathway PWY-1861

  • taxonomic range:
  • common name:
    • formaldehyde assimilation II (RuMP Cycle)
  • Synonym(s):
    • ribulose monophosphate cycle
    • formaldehyde assimilation
    • RuMP pathway

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-1861&oldid=40596"