Difference between revisions of "PWY-1861"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_WATER ExchangeSeed_WATER] == * direction: ** REVERSIBLE * Synonym(s): == Reaction For...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_WATER ExchangeSeed_WATER] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
* common name:
 +
** formaldehyde assimilation II (RuMP Cycle)
 
* Synonym(s):
 
* Synonym(s):
 +
** ribulose monophosphate cycle
 +
** formaldehyde assimilation
 +
** RuMP pathway
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''7''' reactions found over '''9''' reactions in the full pathway
−
** 1.0 [[WATER]][C-BOUNDARY] '''<=>''' 1.0 [[WATER]][e]
+
* [[1TRANSKETO-RXN]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1.0 H2O[C-BOUNDARY] '''<=>''' 1.0 H2O[e]
+
*** [[Tiso_gene_11559]]
−
 
+
*** [[Tiso_gene_5008]]
−
== Genes associated with this reaction  ==
+
** 5 reconstruction source(s) associated:
−
== Pathways  ==
+
*** [[annotation-in-silico_annotation]]
−
== Reconstruction information  ==
+
*** [[orthology-athaliana]]
−
* [[manual]]:
+
*** [[annotation-experimental_annotation]]
−
** [[added to manage seeds from boundary to extracellular compartment]]
+
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[2TRANSKETO-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_11559]]
 +
*** [[Tiso_gene_5008]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[6PFRUCTPHOS-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_5733]]
 +
*** [[Tiso_gene_596]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[F16ALDOLASE-RXN]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_12272]]
 +
*** [[Tiso_gene_65]]
 +
*** [[Tiso_gene_9119]]
 +
*** [[Tiso_gene_14568]]
 +
*** [[Tiso_gene_9179]]
 +
*** [[Tiso_gene_9118]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[RIB5PISOM-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_18217]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[manual-primary_network]]
 +
* [[RIBULP3EPIM-RXN]]
 +
** 3 associated gene(s):
 +
*** [[Tiso_gene_19140]]
 +
*** [[Tiso_gene_4754]]
 +
*** [[Tiso_gene_10879]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[TRANSALDOL-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_17601]]
 +
*** [[Tiso_gene_1831]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=R12-RXN R12-RXN]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: in pathway=}}
+
{{#set: common name=formaldehyde assimilation II (RuMP Cycle)}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=ribulose monophosphate cycle|formaldehyde assimilation|RuMP pathway}}
−
{{#set: reconstruction source=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reaction found=7}}
 +
{{#set: total reaction=9}}
 +
{{#set: completion rate=78.0}}

Latest revision as of 19:16, 21 March 2018

Pathway PWY-1861

  • taxonomic range:
  • common name:
    • formaldehyde assimilation II (RuMP Cycle)
  • Synonym(s):
    • ribulose monophosphate cycle
    • formaldehyde assimilation
    • RuMP pathway

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-1861&oldid=40596"