Difference between revisions of "Tiso gene 3788"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9724 RXN-9724] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Gene == Gene Tiso_gene_3788 == * right end position: ** 15495 * transcription direction: ** POSITIVE * left end position: ** 13412 * centisome position: ** 83.621...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9724 RXN-9724] ==
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== Gene Tiso_gene_3788 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 15495
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.3.1.77 EC-1.3.1.77]
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** POSITIVE
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* left end position:
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** 13412
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* centisome position:
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** 83.62118   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GLYCINE--TRNA-LIGASE-RXN]]
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** 3 [[PROTON]][c] '''+''' 1 [[PELARGONIDIN-CMPD]][c] '''+''' 2 [[NADPH]][c] '''=>''' 2 [[NADP]][c] '''+''' 1 [[CPD-10413]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 3 H+[c] '''+''' 1 pelargonidin[c] '''+''' 2 NADPH[c] '''=>''' 2 NADP+[c] '''+''' 1 (-)-epiafzelechin[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[TRNA-CHARGING-PWY]]
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* Gene: [[Tiso_gene_15272]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9504]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY-6035]], 2,3-cis-flavanols biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6035 PWY-6035]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=15495}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06541 R06541]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=13412}}
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{{#set: ec number=EC-1.3.1.77}}
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{{#set: centisome position=83.62118    }}
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{{#set: gene associated=Tiso_gene_15272|Tiso_gene_9504}}
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{{#set: reaction associated=GLYCINE--TRNA-LIGASE-RXN}}
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{{#set: in pathway=PWY-6035}}
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:17, 21 March 2018

Gene Tiso_gene_3788

  • right end position:
    • 15495
  • transcription direction:
    • POSITIVE
  • left end position:
    • 13412
  • centisome position:
    • 83.62118
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3788&oldid=40619"