Difference between revisions of "FAA"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FAA FAA] == * direction: ** LEFT-TO-RIGHT * common name: ** fumarylacetoacetase * Synonym(s): == R...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FAA FAA] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** LEFT-TO-RIGHT
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
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* common name:
 
* common name:
** L-tyrosine degradation I
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** fumarylacetoacetase
 
* Synonym(s):
 
* Synonym(s):
** tyrosine fumarate catabolism
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''4''' reactions found over '''5''' reactions in the full pathway
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* With identifiers:
* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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** 1.0 [[4-FUMARYL-ACETOACETATE]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[3-KETOBUTYRATE]][c] '''+''' 1.0 [[PROTON]][c] '''+''' 1.0 [[FUM]][c]
** 3 associated gene(s):
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* With common name(s):
*** [[Tiso_gene_18977]]
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** 1.0 4-fumaryl-acetoacetate[c] '''+''' 1.0 H2O[c] '''=>''' 1.0 acetoacetate[c] '''+''' 1.0 H+[c] '''+''' 1.0 fumarate[c]
*** [[Tiso_gene_18976]]
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*** [[Tiso_gene_18328]]
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== Genes associated with this reaction  ==
** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_5675]]
*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
*** [[orthology-synechocystis]]
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== Pathways  ==
*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
* [[FUMARYLACETOACETASE-RXN]]
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* Category: [[orthology]]
** 2 associated gene(s):
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** Source: [[orthology-creinhardtii]]
*** [[Tiso_gene_5675]]
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*** Tool: [[pantograph]]
*** [[Tiso_gene_2213]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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* [[HOMOGENTISATE-12-DIOXYGENASE-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_20095]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[TYROSINE-AMINOTRANSFERASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_10680]]
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*** [[Tiso_gene_6815]]
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*** [[Tiso_gene_17718]]
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** 3 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MALEYLACETOACETATE-ISOMERASE-RXN MALEYLACETOACETATE-ISOMERASE-RXN]
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== External links  ==
 
== External links  ==
* UM-BBD-PWY : tyr
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{{#set: direction=LEFT-TO-RIGHT}}
{{#set: taxonomic range=TAX-1224}}
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{{#set: common name=fumarylacetoacetase}}
{{#set: taxonomic range=TAX-4751}}
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{{#set: gene associated=Tiso_gene_5675}}
{{#set: taxonomic range=TAX-40674}}
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{{#set: in pathway=}}
{{#set: common name=L-tyrosine degradation I}}
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{{#set: reconstruction category=orthology}}
{{#set: common name=tyrosine fumarate catabolism}}
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{{#set: reconstruction source=orthology-creinhardtii}}
{{#set: reaction found=4}}
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{{#set: reconstruction tool=pantograph}}
{{#set: total reaction=5}}
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{{#set: completion rate=80.0}}
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Latest revision as of 19:17, 21 March 2018

Reaction FAA

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • fumarylacetoacetase
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links