Difference between revisions of "RXN-16909"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16909 RXN-16909] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16909 RXN-16909] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39119 TAX-39119]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-29197 TAX-29197]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38410 TAX-38410]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5747 TAX-5747]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2864 TAX-2864]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-877183 TAX-877183]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2833 TAX-2833]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2825 TAX-2825]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
 
* common name:
 
* common name:
−
** Calvin-Benson-Bassham cycle
+
** carbamoyl_phosphate_synthetase
 +
** protein_pyr1-3
 
* Synonym(s):
 
* Synonym(s):
−
** photosynthetic dark reactions
 
−
** photosynthetic CO2 fixation
 
−
** reductive pentose phosphate pathway
 
−
** Calvin cycle
 
−
** carbon fixation
 
−
** Calvin-Benson cycle
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''13''' reactions found over '''13''' reactions in the full pathway
+
* With identifiers:
−
* [[1.2.1.13-RXN]]
+
** 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[CPD-18238]][c] '''+''' 1 [[ADP]][c]
−
* [[1TRANSKETO-RXN]]
+
* With common name(s):
−
* [[2TRANSKETO-RXN]]
+
** 1 ATP[c] '''+''' 1 hydrogencarbonate[c] '''=>''' 1 carboxyphosphate[c] '''+''' 1 ADP[c]
−
* [[F16ALDOLASE-RXN]]
+
 
−
* [[F16BDEPHOS-RXN]]
+
== Genes associated with this reaction  ==
−
* [[PHOSGLYPHOS-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PHOSPHORIBULOKINASE-RXN]]
+
* Gene: [[Tiso_gene_4976]]
−
* [[RIB5PISOM-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
+
*** Assignment: EC-NUMBER
−
* [[RIBULP3EPIM-RXN]]
+
* Gene: [[Tiso_gene_4685]]
−
* [[SEDOBISALDOL-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
+
*** Assignment: EC-NUMBER
−
* [[TRIOSEPISOMERIZATION-RXN]]
+
** Source: [[annotation-experimental_annotation]]
−
== Reaction(s) not found ==
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_4975]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7693]], guadinomine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7693 PWY-7693]
 +
** '''3''' reactions found over '''12''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PLANTCYC : CALVIN-PWY
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* ARACYC:
+
{{#set: common name=carbamoyl_phosphate_synthetase}}
−
** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
{{#set: common name=protein_pyr1-3}}
−
{{#set: taxonomic range=TAX-1117}}
+
{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4685|Tiso_gene_4975}}
−
{{#set: taxonomic range=TAX-39119}}
+
{{#set: in pathway=PWY-7693}}
−
{{#set: taxonomic range=TAX-38254}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: taxonomic range=TAX-29197}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
−
{{#set: taxonomic range=TAX-38410}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: taxonomic range=TAX-5747}}
+
−
{{#set: taxonomic range=TAX-2864}}
+
−
{{#set: taxonomic range=TAX-877183}}
+
−
{{#set: taxonomic range=TAX-2836}}
+
−
{{#set: taxonomic range=TAX-3027}}
+
−
{{#set: taxonomic range=TAX-2830}}
+
−
{{#set: taxonomic range=TAX-2833}}
+
−
{{#set: taxonomic range=TAX-3041}}
+
−
{{#set: taxonomic range=TAX-33682}}
+
−
{{#set: taxonomic range=TAX-2763}}
+
−
{{#set: taxonomic range=TAX-2870}}
+
−
{{#set: taxonomic range=TAX-2825}}
+
−
{{#set: taxonomic range=TAX-2}}
+
−
{{#set: taxonomic range=TAX-33090}}
+
−
{{#set: common name=Calvin-Benson-Bassham cycle}}
+
−
{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
+
−
{{#set: reaction found=13}}
+
−
{{#set: reaction not found=13}}
+
−
{{#set: completion rate=100.0}}
+

Latest revision as of 19:17, 21 March 2018

Reaction RXN-16909

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carbamoyl_phosphate_synthetase
    • protein_pyr1-3
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 hydrogencarbonate[c] => 1 carboxyphosphate[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7693, guadinomine B biosynthesis: PWY-7693
    • 3 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16909&oldid=40638"