Difference between revisions of "RXN-1404"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_13371 == * left end position: ** 251 * transcription direction: ** POSITIVE * right end position: ** 3537 * centisome position: ** 3.954624...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] == * direction: ** LEFT-TO-RIGHT * common name: ** nitrilase * ec number: ** [ht...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] == |
| − | * | + | * direction: |
| − | + | ** LEFT-TO-RIGHT | |
| − | + | * common name: | |
| − | ** | + | ** nitrilase |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/3.5.5.1 EC-3.5.5.1] |
| − | * | + | |
| − | ** 3. | + | |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * [[3 | + | * With identifiers: |
| − | ** in-silico_annotation | + | ** 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c] |
| − | *** | + | * With common name(s): |
| − | == Pathways | + | ** 1 indole-3-acetonitrile[c] '''+''' 2 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c] |
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_10996]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
| + | ** Source: [[orthology-athaliana]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | == Pathways == | ||
| + | * [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581] | ||
| + | ** '''3''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026] | ||
| + | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
| + | * [[PWYQT-4476]], indole glucosinolate activation (herbivore attack): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4476 PWYQT-4476] | ||
| + | ** '''1''' reactions found over '''13''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-athaliana]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=nitrilase}} |
| − | {{#set: | + | {{#set: ec number=EC-3.5.5.1}} |
| + | {{#set: gene associated=Tiso_gene_10996}} | ||
| + | {{#set: in pathway=PWY-581|PWY-5026|PWYQT-4476}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 20:17, 21 March 2018
Contents
Reaction RXN-1404
- direction:
- LEFT-TO-RIGHT
- common name:
- nitrilase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 INDOLEYL-CPD[c] + 2 WATER[c] => 1 AMMONIUM[c] + 1 INDOLE_ACETATE_AUXIN[c]
- With common name(s):
- 1 indole-3-acetonitrile[c] + 2 H2O[c] => 1 ammonium[c] + 1 indole-3-acetate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_10996
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-athaliana
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
Pathways
- PWY-581, indole-3-acetate biosynthesis II: PWY-581
- 3 reactions found over 13 reactions in the full pathway
- PWY-5026, indole-3-acetate biosynthesis V (bacteria and fungi): PWY-5026
- 1 reactions found over 1 reactions in the full pathway
- PWYQT-4476, indole glucosinolate activation (herbivore attack): PWYQT-4476
- 1 reactions found over 13 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- LIGAND-RXN:
