Difference between revisions of "Tiso gene 17734"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2...")
(Created page with "Category:Gene == Gene Tiso_gene_17734 == * right end position: ** 1703 * transcription direction: ** POSITIVE * left end position: ** 272 * centisome position: ** 7.804878...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
+
== Gene Tiso_gene_17734 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 1703
−
* ec number:
+
* transcription direction:
−
** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
+
** POSITIVE
 +
* left end position:
 +
** 272
 +
* centisome position:
 +
** 7.804878   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ALDOSE-1-EPIMERASE-RXN]]
−
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CPD-4211]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[GERANYL-PP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 isopentenyl diphosphate[c] '''+''' 1 dimethylallyl diphosphate[c] '''<=>''' 1 diphosphate[c] '''+''' 1 geranyl diphosphate[c]
+
* Reaction: [[ALDOSE1EPIM-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: automated-name-match
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[G6PI]]
−
* [[Tiso_gene_19542]]
+
** Source: [[orthology-creinhardtii]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Reaction: [[GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN]]
−
* [[Tiso_gene_18201]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_16284]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_2848]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_1035]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4719]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11582]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13582]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10317]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
 
** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
−
*** Tool: [[pantograph]]
+
== Pathways associated ==
−
** Source: [[orthology-synechocystis]]
+
* [[PWY-6317]]
−
*** Tool: [[pantograph]]
+
* [[PWY66-422]]
−
** Source: [[orthology-esiliculosus]]
+
* [[PWY0-1466]]
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=1703}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=272}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
+
{{#set: centisome position=7.804878    }}
−
* UNIPROT:
+
{{#set: reaction associated=ALDOSE-1-EPIMERASE-RXN|ALDOSE1EPIM-RXN|G6PI|GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
{{#set: pathway associated=PWY-6317|PWY66-422|PWY0-1466}}
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
+
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
+
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
+
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
+
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
+
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
+
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
+
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
+
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
+
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
+
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
+
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
+
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
+
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
+
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.5.1.1}}
+
−
{{#set: gene associated=Tiso_gene_19542|Tiso_gene_18201|Tiso_gene_16284|Tiso_gene_2848|Tiso_gene_1035|Tiso_gene_4719|Tiso_gene_11582|Tiso_gene_13582|Tiso_gene_10317}}
+
−
{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-7102|PWY-7182|PWY-7659|PWY-5123|PWY-5122|PWY-6383|PWY-7141|PWY-7410}}
+
−
{{#set: reconstruction category=orthology|manual}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|manual-primary_network|orthology-esiliculosus|orthology-synechocystis}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 19:17, 21 March 2018

Gene Tiso_gene_17734

  • right end position:
    • 1703
  • transcription direction:
    • POSITIVE
  • left end position:
    • 272
  • centisome position:
    • 7.804878
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17734&oldid=40695"