Difference between revisions of "PWY-4861"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/2...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4861 PWY-4861] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPSYN-RXN GPPSYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4861 PWY-4861] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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** [http://enzyme.expasy.org/EC/2.5.1.1 EC-2.5.1.1]
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* common name:
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** UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate)
 
* Synonym(s):
 
* Synonym(s):
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** UDP-galacturonic acid biosynthesis
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** UDP-GalA biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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  '''1''' reactions found over '''1''' reactions in the full pathway
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** 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
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* [[UDP-GLUCURONATE-4-EPIMERASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 dimethylallyl diphosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''<=>''' 1 geranyl diphosphate[c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_12322]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_11582]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2848]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_13582]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1035]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18201]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_19542]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10317]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_16284]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_4719]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7709]], (3R)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7182]], linalool biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7182 PWY-7182]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7659]], viridicatumtoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7659 PWY-7659]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5122]], geranyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5122 PWY-5122]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7141]], (3S)-linalool biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7141 PWY-7141]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7410]], ipsdienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7410 PWY-7410]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-4861 PWY-4861]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
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{{#set: taxonomic range=TAX-3193}}
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* UNIPROT:
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{{#set: common name=UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate)}}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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{{#set: common name=UDP-galacturonic acid biosynthesis|UDP-GalA biosynthesis}}
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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{{#set: total reaction=1}}
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** [http://www.uniprot.org/uniprot/P46376 P46376]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/Q45220 Q45220]
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/Q50891 Q50891]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.5.1.1}}
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{{#set: gene associated=Tiso_gene_11582|Tiso_gene_2848|Tiso_gene_13582|Tiso_gene_1035|Tiso_gene_18201|Tiso_gene_19542|Tiso_gene_10317|Tiso_gene_16284|Tiso_gene_4719}}
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{{#set: in pathway=PWY-7736|PWY-6859|PWY-7709|PWY-7102|PWY-7182|PWY-7659|PWY-5123|PWY-5122|PWY-6383|PWY-7141|PWY-7410}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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Latest revision as of 19:17, 21 March 2018

Pathway PWY-4861

  • taxonomic range:
  • common name:
    • UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate)
  • Synonym(s):
    • UDP-galacturonic acid biosynthesis
    • UDP-GalA biosynthesis

Reaction(s) found

1 reactions found over 1 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-4861&oldid=40707"