Difference between revisions of "PWY-6100"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6100 PWY-6100] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6100 PWY-6100] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** beta-glucosidase-like_chloroplastic
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** L-carnitine biosynthesis
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** ORF
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** beta_glucosidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
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* Synonym(s):
 
* Synonym(s):
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** (R)-carnitine biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''4''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[LINAMARIN]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[2-HYDROXY-2-METHYLPROPANENITRILE]][c]
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* [[RXN-9896]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 linamarin[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 2-hydroxy-2-methylpropanenitrile[c]
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*** [[Tiso_gene_13940]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_2843]]
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== Reaction(s) not found ==
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.11.1-RXN 1.14.11.1-RXN]
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* [[Tiso_gene_13306]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.1.47-RXN 1.2.1.47-RXN]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=TRIMETHYLLYSINE-DIOXYGENASE-RXN TRIMETHYLLYSINE-DIOXYGENASE-RXN]
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***EC-NUMBER
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* [[Tiso_gene_2344]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10001]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6187]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6497]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6188]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8669]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13305]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3467]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6007]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5836]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15067]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-3121]], linamarin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7091]], linustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7091 PWY-7091]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* REACTOME : REACT_2125
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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* LIGAND-MAP:
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{{#set: common name=ORF}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00310 map00310]
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=beta_glucosidase}}
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{{#set: common name=L-carnitine biosynthesis}}
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{{#set: ec number=EC-3.2.1.21}}
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{{#set: common name=(R)-carnitine biosynthesis}}
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{{#set: gene associated=Tiso_gene_2843|Tiso_gene_13306|Tiso_gene_2344|Tiso_gene_10001|Tiso_gene_6187|Tiso_gene_6497|Tiso_gene_6188|Tiso_gene_8669|Tiso_gene_13305|Tiso_gene_3467|Tiso_gene_6007|Tiso_gene_5836|Tiso_gene_15067|Tiso_gene_15066}}
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{{#set: reaction found=1}}
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{{#set: in pathway=PWY-3121|PWY-7091}}
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{{#set: total reaction=4}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=25.0}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:18, 21 March 2018

Pathway PWY-6100

  • taxonomic range:
  • common name:
    • L-carnitine biosynthesis
  • Synonym(s):
    • (R)-carnitine biosynthesis

Reaction(s) found

1 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

  • REACTOME : REACT_2125
  • LIGAND-MAP:




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