Difference between revisions of "PHENYLALANINE-DEG1-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-DEG1-PWY PHENYLALANINE-DEG1-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-DEG1-PWY PHENYLALANINE-DEG1-PWY] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** L-phenylalanine degradation I (aerobic)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** (3R)-hydroxymyristoyl-ACP dehydratase
 
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''1''' reactions found over '''3''' reactions in the full pathway
−
** 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* [[RXN-7908]]
−
* With common name(s):
+
** 2 associated gene(s):
−
** 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''=>''' 1 a trans tetradec-2-enoyl-[acp][c] '''+''' 1 H2O[c]
+
*** [[Tiso_gene_14844]]
−
 
+
*** [[Tiso_gene_14845]]
−
== Genes associated with this reaction  ==
+
** 2 reconstruction source(s) associated:
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-in-silico_annotation]]
−
* Gene: [[Tiso_gene_135]]
+
*** [[orthology-esiliculosus]]
−
** Source: [[annotation-in-silico_annotation]]
+
== Reaction(s) not found ==
−
*** Assignment: EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-4-MONOOXYGENASE-RXN PHENYLALANINE-4-MONOOXYGENASE-RXN]
−
* Gene: [[Tiso_gene_136]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7909 RXN-7909]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6884]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_13394]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_9421]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
* Gene: [[Tiso_gene_10876]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6885]]
+
−
** Source: [[orthology-synechocystis]]
+
−
* Gene: [[Tiso_gene_500]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6671]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-4751}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: taxonomic range=TAX-40674}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: common name=L-phenylalanine degradation I (aerobic)}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: reaction found=1}}
−
{{#set: common name=(3R)-hydroxymyristoyl-ACP dehydratase}}
+
{{#set: total reaction=3}}
−
{{#set: gene associated=Tiso_gene_135|Tiso_gene_136|Tiso_gene_6884|Tiso_gene_13394|Tiso_gene_9421|Tiso_gene_10876|Tiso_gene_6885|Tiso_gene_500|Tiso_gene_6671}}
+
{{#set: completion rate=33.0}}
−
{{#set: in pathway=PWY-5971|PWY-5994}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|annotation-experimental_annotation}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:18, 21 March 2018

Pathway PHENYLALANINE-DEG1-PWY

Reaction(s) found

1 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PHENYLALANINE-DEG1-PWY&oldid=40753"