Difference between revisions of "RXN-9537"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5341 RXN-5341] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9537 RXN-9537] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** polyketide_synthase |
− | + | ||
− | + | ||
− | + | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/3.2.1. | + | ** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86] |
+ | ** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85] | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59] | ||
* Synonym(s): | * Synonym(s): | ||
+ | ** (3R)-hydroxymyristoyl-ACP dehydratase | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''=>''' 1 a trans tetradec-2-enoyl-[acp][c] '''+''' 1 H2O[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_135]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | + | *** Assignment: EC-NUMBER | |
− | + | * Gene: [[Tiso_gene_136]] | |
− | ***EC-NUMBER | + | ** Source: [[annotation-in-silico_annotation]] |
− | * [[ | + | *** Assignment: EC-NUMBER |
− | ** [[ | + | * Gene: [[Tiso_gene_6884]] |
− | + | ** Source: [[annotation-experimental_annotation]] | |
− | + | *** Assignment: AUTOMATED-NAME-MATCH | |
− | ***EC-NUMBER | + | * Gene: [[Tiso_gene_13394]] |
− | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | ** [[ | + | *** Assignment: EC-NUMBER |
− | * | + | * Gene: [[Tiso_gene_9421]] |
− | ** | + | ** Source: [[orthology-creinhardtii]] |
− | + | * Gene: [[Tiso_gene_10876]] | |
− | + | ** Source: [[annotation-in-silico_annotation]] | |
− | + | *** Assignment: EC-NUMBER | |
− | * [[ | + | * Gene: [[Tiso_gene_6885]] |
− | ** [[ | + | ** Source: [[orthology-synechocystis]] |
− | + | * Gene: [[Tiso_gene_500]] | |
− | + | ** Source: [[annotation-in-silico_annotation]] | |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | * [[ | + | * Gene: [[Tiso_gene_6671]] |
− | ** | + | ** Source: [[orthology-creinhardtii]] |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | * | + | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | ** | + | |
− | + | ||
− | + | ||
− | ***EC-NUMBER | + | |
− | * [[ | + | |
− | ** [[ | + | |
− | * [[ | + | |
− | ** | + | |
− | + | ||
− | + | ||
− | ***EC-NUMBER | + | |
− | * [[ | + | |
− | ** | + | |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] |
− | ** ''' | + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994] |
− | ** ''' | + | ** '''31''' reactions found over '''31''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
− | * [[orthology]]: | + | * Category: [[orthology]] |
− | ** [[pantograph]]: | + | ** Source: [[orthology-creinhardtii]] |
− | *** [[ | + | *** Tool: [[pantograph]] |
− | * [[ | + | ** Source: [[orthology-synechocystis]] |
− | ** [[ | + | *** Tool: [[pantograph]] |
− | *** [[experimental_annotation]] | + | * Category: [[manual]] |
− | *** [[in-silico_annotation]] | + | ** Source: [[manual-primary_network]] |
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=polyketide_synthase}} |
− | {{#set: | + | {{#set: ec number=EC-2.3.1.86}} |
− | {{#set: | + | {{#set: ec number=EC-2.3.1.85}} |
− | {{#set: | + | {{#set: ec number=EC-4.2.1.59}} |
− | {{#set: | + | {{#set: common name=(3R)-hydroxymyristoyl-ACP dehydratase}} |
− | {{#set: gene associated= | + | {{#set: gene associated=Tiso_gene_135|Tiso_gene_136|Tiso_gene_6884|Tiso_gene_13394|Tiso_gene_9421|Tiso_gene_10876|Tiso_gene_6885|Tiso_gene_500|Tiso_gene_6671}} |
− | {{#set: in pathway=PWY- | + | {{#set: in pathway=PWY-5971|PWY-5994}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=orthology|manual|annotation}} |
− | + | {{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|annotation-experimental_annotation}} | |
− | {{#set: reconstruction source= | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
− | + | ||
− | {{#set: reconstruction tool=pathwaytools | + | |
− | + |
Latest revision as of 19:18, 21 March 2018
Contents
Reaction RXN-9537
- direction:
- LEFT-TO-RIGHT
- common name:
- polyketide_synthase
- ec number:
- Synonym(s):
- (3R)-hydroxymyristoyl-ACP dehydratase
Reaction Formula
- With identifiers:
- 1 R-3-hydroxymyristoyl-ACPs[c] => 1 Tetradec-2-enoyl-ACPs[c] + 1 WATER[c]
- With common name(s):
- 1 a (3R)-3-hydroxymyristoyl-[acp][c] => 1 a trans tetradec-2-enoyl-[acp][c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_135
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_136
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6884
- Source: annotation-experimental_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-experimental_annotation
- Gene: Tiso_gene_13394
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_9421
- Source: orthology-creinhardtii
- Gene: Tiso_gene_10876
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6885
- Source: orthology-synechocystis
- Gene: Tiso_gene_500
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6671
- Source: orthology-creinhardtii
Pathways
- PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
- 31 reactions found over 31 reactions in the full pathway
- PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
- 31 reactions found over 31 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-creinhardtii
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation