Difference between revisions of "Tiso gene 12143"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-151 RXN1F-151] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Gene == Gene Tiso_gene_12143 == * right end position: ** 6409 * transcription direction: ** NEGATIVE * left end position: ** 4549 * centisome position: ** 38.8007...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-151 RXN1F-151] ==
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== Gene Tiso_gene_12143 ==
* direction:
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* right end position:
** LEFT-TO-RIGHT
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** 6409
* ec number:
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* transcription direction:
** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
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** NEGATIVE
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* left end position:
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** 4549
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* centisome position:
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** 38.80075   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reactions associated ==
* With identifiers:
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* Reaction: [[ETHANOLAMINE-PHOSPHATE-PHOSPHO-LYASE-RXN]]
** 1 [[CPD1F-126]][c] '''=>''' 1 [[CPD1F-129]][c]
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** Source: [[annotation-in-silico_annotation]]
* With common name(s):
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*** Assignment: automated-name-match
** 1 γ-carotene[c] '''=>''' 1 all-trans-β-carotene[c]
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== Pathways associated ==
 
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_3577]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_4457]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_11980]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_6282]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_8263]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1547]]
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** [[pantograph]]-[[athaliana]]
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== Pathways ==
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: right end position=6409}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32242 32242]
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{{#set: transcription direction=NEGATIVE}}
* LIGAND-RXN:
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{{#set: left end position=4549}}
** [http://www.genome.jp/dbget-bin/www_bget?R03824 R03824]
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{{#set: centisome position=38.80075    }}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ETHANOLAMINE-PHOSPHATE-PHOSPHO-LYASE-RXN}}
{{#set: ec number=EC-5.5.1.19}}
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{{#set: gene associated=Tiso_gene_3577|Tiso_gene_4457|Tiso_gene_11980|Tiso_gene_6282|Tiso_gene_8263|Tiso_gene_1547}}
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{{#set: in pathway=PWY-5943}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:19, 21 March 2018

Gene Tiso_gene_12143

  • right end position:
    • 6409
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 4549
  • centisome position:
    • 38.80075
  • Synonym(s):

Reactions associated

Pathways associated

External links