Difference between revisions of "ACETATE--COA-LIGASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-2...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-28889 TAX-28889]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** 3-hydroxypropanoate/4-hydroxybutanate cycle
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** acetyl-coenzyme_a_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.1 EC-6.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
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** 3-HP/4-HB cycle
 
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** 3-hydroxypropionate/4-hydroxybutyrate cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''8''' reactions found over '''16''' reactions in the full pathway
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* With identifiers:
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ACET]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_16181]]
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 acetate[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_15327]]
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*** [[Tiso_gene_17451]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_3617]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** Source: [[orthology-creinhardtii]]
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** 4 associated gene(s):
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* Gene: [[Tiso_gene_1612]]
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*** [[Tiso_gene_7965]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_2812]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_5029]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_3800]]
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*** Assignment: EC-NUMBER
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** 5 reconstruction source(s) associated:
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** Source: [[orthology-synechocystis]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_3616]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[METHYLMALONYL-COA-MUT-RXN]]
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** Source: [[annotation-experimental_annotation]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_9771]]
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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* [[PWY66-161]], ethanol degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-161 PWY66-161]
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*** [[annotation-experimental_annotation]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21]
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* [[PROPIONYL-COA-CARBOXY-RXN]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** 1 associated gene(s):
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* [[PWY66-162]], ethanol degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-162 PWY66-162]
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*** [[Tiso_gene_5029]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY0-1313]], acetate conversion to acetyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1313 PWY0-1313]
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*** [[orthology-esiliculosus]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[RXN-11002]]
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* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
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** 0 associated gene:
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** '''4''' reactions found over '''9''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
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*** [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-11662]]
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== Reconstruction information  ==
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** 7 associated gene(s):
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* Category: [[orthology]]
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*** [[Tiso_gene_5857]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_16703]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_14027]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_14262]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_14026]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_18838]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_18839]]
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* Category: [[manual]]
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** 5 reconstruction source(s) associated:
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** Source: [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* Category: [[annotation]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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* [[RXN-11667]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5857]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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* [[RXN-6383]]
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** 3 associated gene(s):
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*** [[Tiso_gene_5857]]
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*** [[Tiso_gene_16703]]
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*** [[Tiso_gene_14257]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8890 RXN-8890]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8891 RXN-8891]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8963 RXN-8963]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8974 RXN-8974]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9086 RXN-9086]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9087 RXN-9087]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9092 RXN-9092]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-28889}}
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* RHEA:
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{{#set: common name=3-hydroxypropanoate/4-hydroxybutanate cycle}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
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{{#set: common name=3-HP/4-HB cycle|3-hydroxypropionate/4-hydroxybutyrate cycle}}
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* LIGAND-RXN:
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{{#set: reaction found=8}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
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{{#set: total reaction=16}}
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* UNIPROT:
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P27095 P27095]
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** [http://www.uniprot.org/uniprot/P31638 P31638]
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** [http://www.uniprot.org/uniprot/Q12662 Q12662]
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** [http://www.uniprot.org/uniprot/P28812 P28812]
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** [http://www.uniprot.org/uniprot/P27550 P27550]
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** [http://www.uniprot.org/uniprot/O34613 O34613]
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** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
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** [http://www.uniprot.org/uniprot/P36333 P36333]
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** [http://www.uniprot.org/uniprot/Q01574 Q01574]
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** [http://www.uniprot.org/uniprot/P39062 P39062]
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** [http://www.uniprot.org/uniprot/Q01576 Q01576]
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** [http://www.uniprot.org/uniprot/P52910 P52910]
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** [http://www.uniprot.org/uniprot/Q55404 Q55404]
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** [http://www.uniprot.org/uniprot/P16928 P16928]
 +
** [http://www.uniprot.org/uniprot/P16929 P16929]
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** [http://www.uniprot.org/uniprot/O68040 O68040]
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** [http://www.uniprot.org/uniprot/P78773 P78773]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=acetyl-coenzyme_a_synthetase}}
 +
{{#set: ec number=EC-6.2.1.1}}
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{{#set: gene associated=Tiso_gene_3617|Tiso_gene_1612|Tiso_gene_3616}}
 +
{{#set: in pathway=PWY66-161|PWY66-21|PWY66-162|PWY0-1313|PWY-6672|PWY-7118}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:19, 21 March 2018

Reaction ACETATE--COA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acetyl-coenzyme_a_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 acetate[c] => 1 acetyl-CoA[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-161, ethanol degradation III: PWY66-161
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-21, ethanol degradation II: PWY66-21
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-162, ethanol degradation IV: PWY66-162
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1313, acetate conversion to acetyl-CoA: PWY0-1313
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6672, cis-genanyl-CoA degradation: PWY-6672
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-7118, chitin degradation to ethanol: PWY-7118
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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