Difference between revisions of "Tiso gene 10116"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6268 RXN-6268] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ident...")
(Created page with "Category:Gene == Gene Tiso_gene_10116 == * right end position: ** 5027 * transcription direction: ** NEGATIVE * left end position: ** 3216 * centisome position: ** 28.4727...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6268 RXN-6268] ==
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== Gene Tiso_gene_10116 ==
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* direction:
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* right end position:
−
** REVERSIBLE
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** 5027
 +
* transcription direction:
 +
** NEGATIVE
 +
* left end position:
 +
** 3216
 +
* centisome position:
 +
** 28.472775   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[KETOACYLCOATHIOL-RXN]]
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** 1 [[BETAINE-ALDEHYDE-HYDRATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[BETAINE_ALDEHYDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 betaine aldehyde hydrate[c] '''<=>''' 1 H2O[c] '''+''' 1 betaine aldehyde[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-10699]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
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*** Assignment: ec-number
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
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*** Assignment: ec-number
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* Reaction: [[RXN-10700]]
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== Reconstruction information  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[annotation]]:
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*** Assignment: ec-number
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** [[pathwaytools]]:
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** Source: [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
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*** Assignment: ec-number
 +
* Reaction: [[RXN-10701]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-11246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12565]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-12710]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-13617]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14268]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14274]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14277]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14774]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14788]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14793]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14799]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-14803]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-16137]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17116]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17778]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17782]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17787]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17791]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17795]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-17799]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-6435]]
 +
* [[PWY-7654]]
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* [[PWY66-391]]
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* [[PWY-7606]]
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* [[PWY-7337]]
 +
* [[PWY-7340]]
 +
* [[PWY-7338]]
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* [[PWY-7094]]
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* [[PWY-6946]]
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* [[FAO-PWY]]
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* [[PWY-735]]
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* [[PWY-5136]]
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* [[PWY-7726]]
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* [[PWY-6863]]
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* [[PWY-7339]]
 +
* [[PWY-6948]]
 +
* [[PWY-7288]]
 +
* [[PWY-6945]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
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{{#set: right end position=5027}}
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{{#set: in pathway=PWY1F-353|PWY-7494}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: reconstruction category=annotation}}
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{{#set: left end position=3216}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: centisome position=28.472775    }}
−
{{#set: reconstruction source=in-silico_annotation}}
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{{#set: reaction associated=KETOACYLCOATHIOL-RXN|RXN-10699|RXN-10700|RXN-10701|RXN-11246|RXN-12565|RXN-12710|RXN-13617|RXN-14268|RXN-14274|RXN-14277|RXN-14394|RXN-14774|RXN-14788|RXN-14793|RXN-14799|RXN-14803|RXN-16137|RXN-17116|RXN-17778|RXN-17782|RXN-17787|RXN-17791|RXN-17795|RXN-17799}}
 +
{{#set: pathway associated=PWY-6435|PWY-7654|PWY66-391|PWY-7606|PWY-7337|PWY-7340|PWY-7338|PWY-7094|PWY-6946|FAO-PWY|PWY-735|PWY-5136|PWY-7726|PWY-6863|PWY-7339|PWY-6948|PWY-7288|PWY-6945}}

Latest revision as of 19:20, 21 March 2018

Gene Tiso_gene_10116

  • right end position:
    • 5027
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 3216
  • centisome position:
    • 28.472775
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10116&oldid=40943"