Difference between revisions of "RXN-6268"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTATHIONINE-BETA-SYNTHASE-RXN CYSTATHIONINE-BETA-SYNTHASE-RXN] == * direction: ** REVERSIBLE * co...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6268 RXN-6268] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ident...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTATHIONINE-BETA-SYNTHASE-RXN CYSTATHIONINE-BETA-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6268 RXN-6268] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** cysteine
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/4.2.1.22 EC-4.2.1.22]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SER]][c] '''+''' 1 [[HOMO-CYS]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[BETAINE-ALDEHYDE-HYDRATE]][c] '''<=>''' 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-serine[c] '''+''' 1 L-homocysteine[c] '''<=>''' 1 L-cystathionine[c] '''+''' 1 H2O[c]
+
** 1 betaine aldehyde hydrate[c] '''<=>''' 1 betaine aldehyde[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_3732]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
−
* [[Tiso_gene_7852]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSDEGR-PWY HOMOCYSDEGR-PWY]
+
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-I9 PWY-I9]
+
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-801]], L-homocysteine and L-cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10112 10112]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01290 R01290]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P32232 P32232]
 
−
** [http://www.uniprot.org/uniprot/P32582 P32582]
 
−
** [http://www.uniprot.org/uniprot/P35520 P35520]
 
−
** [http://www.uniprot.org/uniprot/Q9YCN5 Q9YCN5]
 
−
** [http://www.uniprot.org/uniprot/Q12633 Q12633]
 
−
** [http://www.uniprot.org/uniprot/P72662 P72662]
 
−
** [http://www.uniprot.org/uniprot/O59701 O59701]
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=cysteine}}
+
{{#set: in pathway=PWY1F-353|PWY-7494}}
−
{{#set: ec number=EC-4.2.1.22}}
+
−
{{#set: gene associated=Tiso_gene_3732|Tiso_gene_7852}}
+
−
{{#set: in pathway=HOMOCYSDEGR-PWY|PWY-I9|PWY-801}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 19:20, 21 March 2018

Reaction RXN-6268

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY1F-353, glycine betaine biosynthesis III (plants): PWY1F-353
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7494, choline degradation IV: PWY-7494
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-6268&oldid=40950"