Difference between revisions of "PWY-7218"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7775 RXN-7775] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7775 RXN-7775] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/1.14.11.9 EC-1.14.11.9]
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** photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
 
* Synonym(s):
 
* Synonym(s):
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** photosynthetic 3-hydroxybutyrate biosynthesis (engineered)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''10''' reactions in the full pathway
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** 1 [[CPD-6994]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-474]][c] '''+''' 1 [[SUC]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 (2S)-eriodictyol[c] '''+''' 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 CO2[c] '''+''' 1 (+)-taxifolin[c] '''+''' 1 succinate[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_3330]]
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** 7 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY1F-823]], leucopelargonidin and leucocyanidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-823 PWY1F-823]
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*** [[orthology-athaliana]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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*** [[manual-primary_network]]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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* [[3PGAREARR-RXN]]
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* [[orthology]]:
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** 16 associated gene(s):
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** [[pantograph]]:
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*** [[Tiso_gene_15048]]
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*** [[athaliana]]
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*** [[Tiso_gene_7201]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[CALVIN-PWY]]
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** 0 associated gene:
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PWY-101]]
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** 0 associated gene:
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* [[PWY-7216]]
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** 0 associated gene:
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* [[PYRUVDEH-RXN]]
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** 7 associated gene(s):
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*** [[Tiso_gene_2515]]
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*** [[Tiso_gene_6983]]
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*** [[Tiso_gene_17539]]
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*** [[Tiso_gene_2693]]
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*** [[Tiso_gene_9330]]
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*** [[Tiso_gene_7519]]
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*** [[Tiso_gene_19780]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03640 R03640]
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{{#set: common name=photosynthetic 3-hydroxybutanoate biosynthesis (engineered)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=photosynthetic 3-hydroxybutyrate biosynthesis (engineered)}}
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{{#set: ec number=EC-1.14.11.9}}
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{{#set: reaction found=7}}
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{{#set: gene associated=Tiso_gene_3330}}
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{{#set: total reaction=10}}
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{{#set: in pathway=PWY1F-823|PWY-6787}}
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{{#set: completion rate=70.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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Latest revision as of 19:20, 21 March 2018

Pathway PWY-7218

  • taxonomic range:
  • common name:
    • photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
  • Synonym(s):
    • photosynthetic 3-hydroxybutyrate biosynthesis (engineered)

Reaction(s) found

7 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7218&oldid=40974"