Difference between revisions of "RXN-14074"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GERANYL-PP GERANYL-PP] == * smiles: ** CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C * inchi key...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14074 RXN-14074] == * direction: ** LEFT-TO-RIGHT * common name: ** adenylate_kinase_domain-con...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GERANYL-PP GERANYL-PP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14074 RXN-14074] ==
* smiles:
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* direction:
** CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C
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** LEFT-TO-RIGHT
* inchi key:
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** InChIKey=GVVPGTZRZFNKDS-JXMROGBWSA-K
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* common name:
 
* common name:
** geranyl diphosphate
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** adenylate_kinase_domain-containing_protein_1
* molecular weight:
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* ec number:
** 311.188   
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** [http://enzyme.expasy.org/EC/2.7.4.4 EC-2.7.4.4]
 
* Synonym(s):
 
* Synonym(s):
** geranyl-diphosphate
 
** geranyl-pyrophosphate
 
** GPP
 
** geranyl-PP
 
** geranyl pyrophosphate
 
** ω,E-geranyl diphosphate
 
  
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
* [[FPPSYN-RXN]]
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* With identifiers:
* [[TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN]]
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** 1 [[AMP]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[ADP]][c]
== Reaction(s) known to produce the compound ==
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* With common name(s):
* [[GPPS]]
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** 1 AMP[c] '''+''' 1 GTP[c] '''=>''' 1 GDP[c] '''+''' 1 ADP[c]
== Reaction(s) of unknown directionality ==
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* [[GPPSYN-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_195]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
* METABOLIGHTS : MTBLC58057
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* RHEA:
* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29864 29864]
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=19379894 19379894]
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{{#set: direction=LEFT-TO-RIGHT}}
* KNAPSACK : C00000846
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{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
* HMDB : HMDB01285
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{{#set: ec number=EC-2.7.4.4}}
* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_195}}
** [http://www.genome.jp/dbget-bin/www_bget?C00341 C00341]
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{{#set: in pathway=}}
* CHEMSPIDER:
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{{#set: reconstruction category=annotation}}
** [http://www.chemspider.com/Chemical-Structure.14211068.html 14211068]
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{{#set: reconstruction source=annotation-in-silico_annotation}}
* CHEBI:
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{{#set: reconstruction tool=pathwaytools}}
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58057 58057]
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* BIGG : grdp
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{{#set: smiles=CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C}}
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{{#set: inchi key=InChIKey=GVVPGTZRZFNKDS-JXMROGBWSA-K}}
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{{#set: common name=geranyl diphosphate}}
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{{#set: molecular weight=311.188    }}
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{{#set: common name=geranyl-diphosphate|geranyl-pyrophosphate|GPP|geranyl-PP|geranyl pyrophosphate|ω,E-geranyl diphosphate}}
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{{#set: consumed by=FPPSYN-RXN|TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN}}
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{{#set: produced by=GPPS}}
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{{#set: consumed or produced by=GPPSYN-RXN}}
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Latest revision as of 20:21, 21 March 2018

Reaction RXN-14074

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • adenylate_kinase_domain-containing_protein_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 AMP[c] + 1 GTP[c] => 1 GDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links