Difference between revisions of "GLUCONEO-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-508 RXN1G-508] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-lignoceroyl-[acyl-car...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-475...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-508 RXN1G-508] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 3-oxo-lignoceroyl-[acyl-carrier protein] reductase
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** gluconeogenesis I
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** 3-oxoacyl-(acyl-carrier-protein)
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−
* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''13''' reactions found over '''13''' reactions in the full pathway
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** 1 [[3-oxo-lignoceroyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxylignoceroyl-ACPs]][c]
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* [[1.1.1.39-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 a 3-oxo-lignoceroyl-[acp][c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 NADP+[c] '''+''' 1 a (3R)-3-hydroxylignoceroyl-[acp][c]
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*** [[Tiso_gene_12896]]
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*** [[Tiso_gene_6675]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_12200]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_13083]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[2PGADEHYDRAT-RXN]]
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***EC-NUMBER
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** 4 associated gene(s):
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_8720]]
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* [[Tiso_gene_9885]]
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*** [[Tiso_gene_14718]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_5619]]
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***EC-NUMBER
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*** [[Tiso_gene_13317]]
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== Pathways  ==
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** 7 reconstruction source(s) associated:
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* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
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*** [[annotation-experimental_annotation]]
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** '''86''' reactions found over '''182''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
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* [[orthology]]:
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*** [[orthology-athaliana]]
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** [[pantograph]]:
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*** [[orthology-synechocystis]]
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*** [[esiliculosus]]
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*** [[manual-primary_network]]
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* [[annotation]]:
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*** [[orthology-creinhardtii]]
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** [[pathwaytools]]:
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* [[3PGAREARR-RXN]]
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*** [[experimental_annotation]]
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** 16 associated gene(s):
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
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*** [[Tiso_gene_15398]]
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*** [[Tiso_gene_9435]]
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*** [[Tiso_gene_16502]]
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*** [[Tiso_gene_4905]]
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*** [[Tiso_gene_8226]]
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*** [[Tiso_gene_4904]]
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*** [[Tiso_gene_3483]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_235]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_6766]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_2323]]
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*** [[Tiso_gene_1990]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALIC-NADP-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_12200]]
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*** [[Tiso_gene_6675]]
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*** [[Tiso_gene_12896]]
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** 3 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PEPCARBOXYKIN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19475]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[PEPSYNTH-RXN]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_18264]]
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_14642]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19962]]
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*** [[Tiso_gene_10646]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
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* ECOCYC:
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{{#set: common name=3-oxo-lignoceroyl-[acyl-carrier protein] reductase}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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* ARACYC:
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{{#set: ec number=EC-1.1.1.100}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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{{#set: gene associated=Tiso_gene_13083|Tiso_gene_9885}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: in pathway=PWYG-321}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: reconstruction category=orthology}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: common name=gluconeogenesis I}}
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{{#set: reconstruction category=annotation}}
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{{#set: reaction found=13}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: total reaction=13}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: completion rate=100.0}}

Latest revision as of 20:21, 21 March 2018

Pathway GLUCONEO-PWY

Reaction(s) found

13 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GLUCONEO-PWY&oldid=41065"