Difference between revisions of "RXN-1143"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-699 PWY-699] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1143 RXN-1143] == * direction: ** LEFT-TO-RIGHT * common name: ** caffeate_o-methyltransferase...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-699 PWY-699] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1143 RXN-1143] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** brassinosteroid biosynthesis I
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** caffeate_o-methyltransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.1.68 EC-2.1.1.68]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''11''' reactions found over '''25''' reactions in the full pathway
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* With identifiers:
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* [[RXN-11535]]
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** 1 [[5-HYDROXY-CONIFERALDEHYDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[SINAPALDEHYDE]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_8263]]
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** 1 5-hydroxy-coniferaldehyde[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 sinapaldehyde[c]
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*** [[Tiso_gene_3577]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-4241]]
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* Gene: [[Tiso_gene_18257]]
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** 2 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_8263]]
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* Gene: [[Tiso_gene_18971]]
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*** [[Tiso_gene_3577]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RXN-711]]
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* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
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** 1 associated gene(s):
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** '''7''' reactions found over '''15''' reactions in the full pathway
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*** [[Tiso_gene_14327]]
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* [[PWY-5168]], ferulate and sinapate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5168 PWY-5168]
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** 1 reconstruction source(s) associated:
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** '''2''' reactions found over '''4''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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* [[RXN-715]]
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* Category: [[orthology]]
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** 2 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_8263]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_3577]]
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* Category: [[annotation]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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* [[RXN-716]]
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** 2 associated gene(s):
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*** [[Tiso_gene_8263]]
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*** [[Tiso_gene_3577]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-717]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3577]]
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*** [[Tiso_gene_8263]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-773]]
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** 2 associated gene(s):
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*** [[Tiso_gene_8263]]
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*** [[Tiso_gene_3577]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-774]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3577]]
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*** [[Tiso_gene_8263]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-775]]
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** 2 associated gene(s):
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*** [[Tiso_gene_8263]]
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*** [[Tiso_gene_3577]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-778]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3577]]
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*** [[Tiso_gene_8263]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-779]]
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** 2 associated gene(s):
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*** [[Tiso_gene_3577]]
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*** [[Tiso_gene_8263]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11536 RXN-11536]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16171 RXN-16171]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16172 RXN-16172]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16173 RXN-16173]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-709 RXN-709]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-710 RXN-710]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-712 RXN-712]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-713 RXN-713]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-714 RXN-714]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-718 RXN-718]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-719 RXN-719]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-720 RXN-720]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-776 RXN-776]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-777 RXN-777]
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== External links  ==
 
== External links  ==
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* ARACYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-699 PWY-699]
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** [http://www.genome.jp/dbget-bin/www_bget?R06576 R06576]
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{{#set: taxonomic range=TAX-3193}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=brassinosteroid biosynthesis I}}
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{{#set: common name=caffeate_o-methyltransferase}}
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{{#set: reaction found=11}}
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{{#set: ec number=EC-2.1.1.68}}
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{{#set: total reaction=25}}
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{{#set: gene associated=Tiso_gene_18257|Tiso_gene_18971}}
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{{#set: completion rate=44.0}}
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{{#set: in pathway=PWY-361|PWY-5168}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:21, 21 March 2018

Reaction RXN-1143

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • caffeate_o-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-361, phenylpropanoid biosynthesis: PWY-361
    • 7 reactions found over 15 reactions in the full pathway
  • PWY-5168, ferulate and sinapate biosynthesis: PWY-5168
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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