Difference between revisions of "DETOX1-PWY-1"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7979 RXN-7979] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** Zea-epoxidase == Reaction For...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 T...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7979 RXN-7979] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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* common name:
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** reactive oxygen species degradation
 
* Synonym(s):
 
* Synonym(s):
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** Zea-epoxidase
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** removal of superoxide radicals
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''6''' reactions in the full pathway
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CPD1F-131]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD1F-133]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
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* [[CATAL-RXN]]
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* With common name(s):
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** 8 associated gene(s):
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** 1 oxygen[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 antheraxanthin[c] '''=>''' 1 H2O[c] '''+''' 1 violaxanthin[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
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*** [[Tiso_gene_3006]]
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*** [[Tiso_gene_11607]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_11916]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_12499]]
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* [[Tiso_gene_10919]]
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*** [[Tiso_gene_5435]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_4990]]
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== Pathways  ==
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*** [[Tiso_gene_19683]]
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* [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945]
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*** [[Tiso_gene_15923]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[PWY-5174]], capsanthin and capsorubin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5174 PWY-5174]
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*** [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** [[orthology-synechocystis]]
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* [[orthology]]:
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* [[DETOX1-PWY]]
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** [[pantograph]]:
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** 0 associated gene:
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*** [[esiliculosus]]
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* [[GLUTATHIONE-PEROXIDASE-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_6679]]
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*** [[Tiso_gene_8644]]
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*** [[Tiso_gene_1377]]
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*** [[Tiso_gene_6680]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[RXN-12540]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[SUPEROX-DISMUT-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_3587]]
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*** [[Tiso_gene_15757]]
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*** [[Tiso_gene_12651]]
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*** [[Tiso_gene_20023]]
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*** [[Tiso_gene_12652]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07200 R07200]
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{{#set: taxonomic range=TAX-2157}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=Zea-epoxidase}}
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{{#set: common name=reactive oxygen species degradation}}
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{{#set: gene associated=Tiso_gene_10919}}
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{{#set: common name=removal of superoxide radicals}}
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{{#set: in pathway=PWY-5945|PWY-5174}}
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{{#set: reaction found=5}}
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{{#set: reconstruction category=orthology}}
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{{#set: total reaction=6}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: completion rate=83.0}}
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{{#set: reconstruction source=esiliculosus}}
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Latest revision as of 19:22, 21 March 2018

Pathway DETOX1-PWY-1

  • taxonomic range:
  • common name:
    • reactive oxygen species degradation
  • Synonym(s):
    • removal of superoxide radicals

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DETOX1-PWY-1&oldid=41153"