Difference between revisions of "RXN1A0-6303"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1A0-6303 RXN1A0-6303] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1A0-6303 RXN1A0-6303] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** gluconeogenesis II (Methanobacterium thermoautotrophicum)
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** [http://enzyme.expasy.org/EC/1.3.1 EC-1.3.1]
 
* Synonym(s):
 
* Synonym(s):
−
** carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''8''' reactions found over '''14''' reactions in the full pathway
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* With identifiers:
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* [[2PGADEHYDRAT-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[Hepta-oxo-hexadecanoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Actinorhodin-Intermediate-2]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_14718]]
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** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a 3,5,7,9,11,13,15-hepta-oxo-hexadecanoyl-[PKS-acp][c] '''=>''' 1 NADP+[c] '''+''' 1 9-hydroxy-3,5,7,11,13,15-hexaoxohexadecanoyl-[PKS-acp][c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_5619]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_13317]]
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Genes have been associated with this reaction based on different elements listed below.
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** 7 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_703]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14920]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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== Pathways  ==
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*** [[orthology-synechocystis]]
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* [[PWY1A0-6325]], actinorhodin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1A0-6325 PWY1A0-6325]
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*** [[manual-primary_network]]
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** '''1''' reactions found over '''12''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
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* [[3PGAREARR-RXN]]
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* Category: [[orthology]]
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** 16 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_2667]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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−
*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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−
*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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−
*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_7201]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
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−
*** [[Tiso_gene_65]]
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−
*** [[Tiso_gene_9119]]
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−
*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
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−
*** [[manual-primary_network]]
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−
*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PYRUVATE-CARBOXYLASE-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_15144]]
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*** [[Tiso_gene_2812]]
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*** [[Tiso_gene_15145]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-5224]]
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** 10 associated gene(s):
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*** [[Tiso_gene_18927]]
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−
*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_6150]]
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*** [[Tiso_gene_7660]]
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*** [[Tiso_gene_1600]]
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*** [[Tiso_gene_3056]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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−
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
+
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_19962]]
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** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
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*** [[manual-primary_network]]
+
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*** [[orthology-creinhardtii]]
+
−
== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
+
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2157}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=gluconeogenesis II (Methanobacterium thermoautotrophicum)}}
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{{#set: ec number=EC-1.3.1}}
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{{#set: common name=carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)}}
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{{#set: gene associated=Tiso_gene_703|Tiso_gene_14920}}
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{{#set: reaction found=8}}
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{{#set: in pathway=PWY1A0-6325}}
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{{#set: total reaction=14}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=57.0}}
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{{#set: reconstruction source=orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:22, 21 March 2018

Reaction RXN1A0-6303

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1A0-6303&oldid=41190"