Difference between revisions of "ASPCARBTRANS-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** protein_pyr1-3 *...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
+
** REVERSIBLE
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
+
 
* common name:
 
* common name:
−
** UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
+
** protein_pyr1-3
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.1.3.2 EC-2.1.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''8''' reactions in the full pathway
+
* With identifiers:
−
* [[UDPNACETYLMURAMATEDEHYDROG-RXN]]
+
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
−
** 18 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_5194]]
+
** 1 L-aspartate[c] '''+''' 1 carbamoyl phosphate[c] '''<=>''' 1 N-carbamoyl-L-aspartate[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
−
*** [[Tiso_gene_4659]]
+
 
−
*** [[Tiso_gene_4661]]
+
== Genes associated with this reaction  ==
−
*** [[Tiso_gene_210]]
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[Tiso_gene_6635]]
+
* Gene: [[Tiso_gene_13527]]
−
*** [[Tiso_gene_5195]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_2120]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_6787]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[Tiso_gene_7079]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_12058]]
+
** Source: [[orthology-athaliana]]
−
*** [[Tiso_gene_14132]]
+
** Source: [[orthology-synechocystis]]
−
*** [[Tiso_gene_2121]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_2119]]
+
** Source: [[orthology-creinhardtii]]
−
*** [[Tiso_gene_8778]]
+
** Source: [[orthology-creinhardtii]]
−
*** [[Tiso_gene_14187]]
+
== Pathways  ==
−
*** [[Tiso_gene_7380]]
+
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
−
*** [[Tiso_gene_12685]]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
*** [[Tiso_gene_18014]]
+
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
−
** 2 reconstruction source(s) associated:
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
*** [[annotation-in-silico_annotation]]
+
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
−
*** [[orthology-esiliculosus]]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
== Reaction(s) not found ==
+
== Reconstruction information  ==
−
* [http://metacyc.org/META/NEW-IMAGE?object=6.3.2.10-RXN 6.3.2.10-RXN]
+
* Category: [[orthology]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=6.3.2.7-RXN 6.3.2.7-RXN]
+
** Source: [[orthology-athaliana]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=DALADALALIG-RXN DALADALALIG-RXN]
+
*** Tool: [[pantograph]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=GLUTRACE-RXN GLUTRACE-RXN]
+
** Source: [[orthology-creinhardtii]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=UDP-NACMUR-ALA-LIG-RXN UDP-NACMUR-ALA-LIG-RXN]
+
*** Tool: [[pantograph]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=UDP-NACMURALA-GLU-LIG-RXN UDP-NACMURALA-GLU-LIG-RXN]
+
** Source: [[orthology-synechocystis]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-201174}}
+
* RHEA:
−
{{#set: taxonomic range=TAX-1239}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20013 20013]
−
{{#set: common name=UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)}}
+
* LIGAND-RXN:
−
{{#set: reaction found=1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01397 R01397]
−
{{#set: total reaction=8}}
+
* UNIPROT:
−
{{#set: completion rate=13.0}}
+
** [http://www.uniprot.org/uniprot/P08955 P08955]
 +
** [http://www.uniprot.org/uniprot/P27708 P27708]
 +
** [http://www.uniprot.org/uniprot/Q04595 Q04595]
 +
** [http://www.uniprot.org/uniprot/Q59711 Q59711]
 +
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 +
** [http://www.uniprot.org/uniprot/P65616 P65616]
 +
** [http://www.uniprot.org/uniprot/Q59712 Q59712]
 +
** [http://www.uniprot.org/uniprot/Q9CF79 Q9CF79]
 +
** [http://www.uniprot.org/uniprot/Q58976 Q58976]
 +
** [http://www.uniprot.org/uniprot/P08421 P08421]
 +
** [http://www.uniprot.org/uniprot/P0A786 P0A786]
 +
** [http://www.uniprot.org/uniprot/P0A7F3 P0A7F3]
 +
** [http://www.uniprot.org/uniprot/P19936 P19936]
 +
** [http://www.uniprot.org/uniprot/Q58801 Q58801]
 +
** [http://www.uniprot.org/uniprot/Q9PNJ6 Q9PNJ6]
 +
** [http://www.uniprot.org/uniprot/P05654 P05654]
 +
** [http://www.uniprot.org/uniprot/P0A1Z4 P0A1Z4]
 +
** [http://www.uniprot.org/uniprot/P19910 P19910]
 +
** [http://www.uniprot.org/uniprot/P07259 P07259]
 +
** [http://www.uniprot.org/uniprot/P20054 P20054]
 +
** [http://www.uniprot.org/uniprot/P05990 P05990]
 +
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 +
** [http://www.uniprot.org/uniprot/Q09027 Q09027]
 +
** [http://www.uniprot.org/uniprot/P49077 P49077]
 +
** [http://www.uniprot.org/uniprot/Q9S983 Q9S983]
 +
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 +
** [http://www.uniprot.org/uniprot/P74163 P74163]
 +
** [http://www.uniprot.org/uniprot/Q43064 Q43064]
 +
** [http://www.uniprot.org/uniprot/Q43086 Q43086]
 +
** [http://www.uniprot.org/uniprot/Q43087 Q43087]
 +
** [http://www.uniprot.org/uniprot/Q84493 Q84493]
 +
** [http://www.uniprot.org/uniprot/Q9UAH8 Q9UAH8]
 +
** [http://www.uniprot.org/uniprot/Q60252 Q60252]
 +
** [http://www.uniprot.org/uniprot/P96174 P96174]
 +
** [http://www.uniprot.org/uniprot/P96175 P96175]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=protein_pyr1-3}}
 +
{{#set: ec number=EC-2.1.3.2}}
 +
{{#set: gene associated=Tiso_gene_13527}}
 +
{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:22, 21 March 2018

Reaction ASPCARBTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • protein_pyr1-3
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ASPCARBTRANS-RXN&oldid=41197"