Difference between revisions of "RXN-13202"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl_phosphate_synthet...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEPHOSPHORYLATION-RXN AMP-DEPHOSPHORYLATION-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5_-nucleotidase
+
** carbamoyl_phosphate_synthetase
−
** 5_deoxy_cytosolic_type_c_protein
+
** protein_pyr1-3
−
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADENOSINE]][c]
+
** 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 AMP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 adenosine[c]
+
** 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''+''' 2 ATP[c] '''=>''' 2 H+[c] '''+''' 1 carbamoyl phosphate[c] '''+''' 2 ADP[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14435]]
+
* Gene: [[Tiso_gene_4976]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_6988]]
+
* Gene: [[Tiso_gene_4685]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_5911]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_4975]]
−
* [[Tiso_gene_14246]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_6640]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13929]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14434]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
+
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29375 29375]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06196 P06196]
+
** [http://www.uniprot.org/uniprot/O15829 O15829]
−
** [http://www.uniprot.org/uniprot/P21588 P21588]
+
** [http://www.uniprot.org/uniprot/O15830 O15830]
−
** [http://www.uniprot.org/uniprot/O34313 O34313]
+
** [http://www.uniprot.org/uniprot/P07756 P07756]
−
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
+
** [http://www.uniprot.org/uniprot/P31327 P31327]
−
** [http://www.uniprot.org/uniprot/O29385 O29385]
+
−
** [http://www.uniprot.org/uniprot/P44569 P44569]
+
−
** [http://www.uniprot.org/uniprot/O83142 O83142]
+
−
** [http://www.uniprot.org/uniprot/P49902 P49902]
+
−
** [http://www.uniprot.org/uniprot/P22848 P22848]
+
−
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
+
−
** [http://www.uniprot.org/uniprot/P21589 P21589]
+
−
** [http://www.uniprot.org/uniprot/P29240 P29240]
+
−
** [http://www.uniprot.org/uniprot/P07024 P07024]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5_-nucleotidase}}
+
{{#set: common name=carbamoyl_phosphate_synthetase}}
−
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
+
{{#set: common name=protein_pyr1-3}}
−
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
+
{{#set: ec number=EC-6.3.4.16}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4685|Tiso_gene_4975}}
−
{{#set: ec number=EC-3.1.3.5}}
+
{{#set: in pathway=PWY-4984}}
−
{{#set: gene associated=Tiso_gene_14435|Tiso_gene_6988|Tiso_gene_5911|Tiso_gene_14246|Tiso_gene_6640|Tiso_gene_13929|Tiso_gene_14434}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=SALVADEHYPOX-PWY}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:22, 21 March 2018

Reaction RXN-13202

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carbamoyl_phosphate_synthetase
    • protein_pyr1-3
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 hydrogencarbonate[c] + 1 ammonium[c] + 2 ATP[c] => 2 H+[c] + 1 carbamoyl phosphate[c] + 2 ADP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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