Difference between revisions of "Tiso gene 1604"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]...")
(Created page with "Category:Gene == Gene Tiso_gene_1604 == * right end position: ** 10932 * transcription direction: ** NEGATIVE * left end position: ** 8142 * centisome position: ** 35.3584...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Gene]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] ==
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== Gene Tiso_gene_1604 ==
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* taxonomic range:
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* right end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** 10932
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* common name:
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* transcription direction:
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** TCA cycle VIII (helicobacter)
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** NEGATIVE
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* left end position:
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** 8142
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* centisome position:
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** 35.35849   
 
* Synonym(s):
 
* Synonym(s):
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** Krebs cycle
 
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** tricarboxylic acid cycle
 
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** TCA cycle
 
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** citric acid cycle
 
  
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== Reaction(s) found ==
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== Reactions associated ==
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'''6''' reactions found over '''9''' reactions in the full pathway
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* Reaction: [[2.7.8.15-RXN]]
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* [[ACONITATEDEHYDR-RXN]]
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** Source: [[orthology-athaliana]]
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** 1 associated gene(s):
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_13007]]
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* Reaction: [[PHOSNACMURPENTATRANS-RXN]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-synechocystis]]
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* Reaction: [[RXN-11347]]
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* [[ACONITATEHYDR-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Assignment: ec-number
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*** [[Tiso_gene_13007]]
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** Source: [[orthology-esiliculosus]]
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** 2 reconstruction source(s) associated:
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* Reaction: [[RXN-8975]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* [[CITSYN-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 4 associated gene(s):
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== Pathways associated ==
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*** [[Tiso_gene_18030]]
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* [[PWY-6470]]
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*** [[Tiso_gene_9601]]
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* [[PWY-6471]]
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*** [[Tiso_gene_9603]]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]]
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*** [[Tiso_gene_9602]]
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* [[PEPTIDOGLYCANSYN-PWY]]
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** 3 reconstruction source(s) associated:
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* [[PWY-5265]]
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*** [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6720]]
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*** [[Tiso_gene_3691]]
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** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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−
*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[manual-primary_network]]
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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* [[RXNI-2]]
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** 1 associated gene(s):
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*** [[Tiso_gene_6754]]
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−
** 2 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXNI-3 RXNI-3]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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{{#set: right end position=10932}}
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{{#set: common name=TCA cycle VIII (helicobacter)}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=Krebs cycle|tricarboxylic acid cycle|TCA cycle|citric acid cycle}}
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{{#set: left end position=8142}}
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{{#set: reaction found=6}}
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{{#set: centisome position=35.35849    }}
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{{#set: total reaction=9}}
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{{#set: reaction associated=2.7.8.15-RXN|PHOSNACMURPENTATRANS-RXN|RXN-11347|RXN-8975}}
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{{#set: completion rate=67.0}}
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{{#set: pathway associated=PWY-6470|PWY-6471|MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS|PEPTIDOGLYCANSYN-PWY|PWY-5265}}

Latest revision as of 19:22, 21 March 2018

Gene Tiso_gene_1604

  • right end position:
    • 10932
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 8142
  • centisome position:
    • 35.35849
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1604&oldid=41222"