Difference between revisions of "PWY-3121"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3465 TAX-34...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3121 PWY-3121] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3465 TAX-3465]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4004 TAX-4004]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3803 TAX-3803]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3977 TAX-3977]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4210 TAX-4210]
 
* common name:
 
* common name:
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** 3-oxoacyl-synthase
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** linamarin degradation
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** polyketide_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
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** linamarin cyanogenesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''2''' reactions in the full pathway
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** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETYL-ACP]][c] '''=>''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[RXN-5341]]
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* With common name(s):
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** 14 associated gene(s):
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** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 an acetyl-[acp][c] '''=>''' 1 an acetoacetyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c]
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*** [[Tiso_gene_3467]]
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*** [[Tiso_gene_5836]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_13305]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_6187]]
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* [[Tiso_gene_19302]]
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*** [[Tiso_gene_10001]]
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_13306]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_8669]]
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* [[Tiso_gene_136]]
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*** [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_2344]]
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***EC-NUMBER
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*** [[Tiso_gene_6188]]
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* [[Tiso_gene_14485]]
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*** [[Tiso_gene_6007]]
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_2843]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_15067]]
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* [[Tiso_gene_13394]]
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*** [[Tiso_gene_6497]]
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** IN-SILICO_ANNOTATION
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** 3 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_5939]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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== Reaction(s) not found ==
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** EXPERIMENTAL_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETONE-CYANHYDRIN-LYASE-RXN ACETONE-CYANHYDRIN-LYASE-RXN]
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15991]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-3465}}
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** [http://www.uniprot.org/uniprot/P23902 P23902]
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{{#set: taxonomic range=TAX-4004}}
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** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
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{{#set: taxonomic range=TAX-3803}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: taxonomic range=TAX-3977}}
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** [http://www.uniprot.org/uniprot/P43710 P43710]
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{{#set: taxonomic range=TAX-4210}}
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** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
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{{#set: common name=linamarin degradation}}
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** [http://www.uniprot.org/uniprot/O67612 O67612]
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{{#set: common name=linamarin cyanogenesis}}
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** [http://www.uniprot.org/uniprot/P20582 P20582]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
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{{#set: total reaction=2}}
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** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
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** [http://www.uniprot.org/uniprot/P43711 P43711]
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** [http://www.uniprot.org/uniprot/O25284 O25284]
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** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
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** [http://www.uniprot.org/uniprot/O34340 O34340]
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** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
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** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
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** [http://www.uniprot.org/uniprot/Q07510 Q07510]
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** [http://www.uniprot.org/uniprot/Q06097 Q06097]
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** [http://www.uniprot.org/uniprot/P41175 P41175]
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** [http://www.uniprot.org/uniprot/P31176 P31176]
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** [http://www.uniprot.org/uniprot/Q40027 Q40027]
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** [http://www.uniprot.org/uniprot/Q40028 Q40028]
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** [http://www.uniprot.org/uniprot/P73283 P73283]
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** [http://www.uniprot.org/uniprot/P0A953 P0A953]
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** [http://www.uniprot.org/uniprot/O64485 O64485]
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** [http://www.uniprot.org/uniprot/O65677 O65677]
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** [http://www.uniprot.org/uniprot/Q39310 Q39310]
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** [http://www.uniprot.org/uniprot/O23738 O23738]
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** [http://www.uniprot.org/uniprot/Q41134 Q41134]
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** [http://www.uniprot.org/uniprot/Q41135 Q41135]
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** [http://www.uniprot.org/uniprot/Q54208 Q54208]
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** [http://www.uniprot.org/uniprot/O54440 O54440]
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** [http://www.uniprot.org/uniprot/P55338 P55338]
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** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: common name=polyketide_synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: gene associated=Tiso_gene_19302|Tiso_gene_136|Tiso_gene_14485|Tiso_gene_13394|Tiso_gene_5939|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_15991}}
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{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:24, 21 March 2018

Pathway PWY-3121

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-3121&oldid=41377"