Difference between revisions of "Tiso gene 801"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14271 RXN-14271] == * direction: ** LEFT-TO-RIGHT * common name: ** (S)-3-hydroxypalmitoyl-CoA...")
(Created page with "Category:Gene == Gene Tiso_gene_801 == * right end position: ** 28494 * transcription direction: ** POSITIVE * left end position: ** 27820 * centisome position: ** 96.8629...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14271 RXN-14271] ==
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== Gene Tiso_gene_801 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 28494
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* common name:
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* transcription direction:
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** (S)-3-hydroxypalmitoyl-CoA oxidoreductase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.211 EC-1.1.1.211]
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** 27820
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* centisome position:
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** 96.86292   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYL-COA-HYDROLASE-RXN]]
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** 1 [[CPD0-2232]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[3-OXOPALMITOYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 (S)-3-hydroxyhexadecanoyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 3-oxo-palmitoyl-CoA[c]
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* Reaction: [[FACOAE1839Z12Z15Z]]
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** Source: [[orthology-creinhardtii]]
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== Genes associated with this reaction  ==
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* Reaction: [[LINOLEOYL-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_5857]]
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* Reaction: [[PALMITOYL-COA-HYDROLASE-RXN]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-10708]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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* [[Tiso_gene_14262]]
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* Reaction: [[RXN-9624]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7654 PWY-7654]
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** '''6''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7656]], Spodoptera littoralis pheromone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7656 PWY-7656]
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** '''6''' reactions found over '''22''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Reaction: [[THIOESTER-RXN]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-1121]]
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* [[PWY-321]]
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* [[PWY-5972]]
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* [[PWY-6733]]
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* [[PWY-735]]
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* [[PWY-5994]]
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* [[PWY3O-355]]
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* [[PWY-6917]]
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* [[PWY-5148]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=28494}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31160 31160]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=27820}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04737 R04737]
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{{#set: centisome position=96.86292    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ACYL-COA-HYDROLASE-RXN|FACOAE1839Z12Z15Z|LINOLEOYL-RXN|PALMITOYL-COA-HYDROLASE-RXN|RXN-10708|RXN-9624|THIOESTER-RXN}}
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{{#set: common name=(S)-3-hydroxypalmitoyl-CoA oxidoreductase}}
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{{#set: pathway associated=PWY-1121|PWY-321|PWY-5972|PWY-6733|PWY-735|PWY-5994|PWY3O-355|PWY-6917|PWY-5148}}
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{{#set: ec number=EC-1.1.1.211}}
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{{#set: gene associated=Tiso_gene_5857|Tiso_gene_14262}}
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{{#set: in pathway=PWY-7654|PWY-7656}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_801

  • right end position:
    • 28494
  • transcription direction:
    • POSITIVE
  • left end position:
    • 27820
  • centisome position:
    • 96.86292
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_801&oldid=41382"