Difference between revisions of "RXN-16380"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5169 PWY-5169] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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* common name:
 
* common name:
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** cyanurate degradation
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** polyketide_synthase
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** ORF
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** cyanuric acid degradation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[R468-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=ALLOPHANATE-HYDROLASE-RXN ALLOPHANATE-HYDROLASE-RXN]
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 stearate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 stearoyl-CoA[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8930 RXN-8930]
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 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_9394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_12275]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_7855]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_500]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_13394]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_348]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_4191]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* UM-BBD-PWY : cya
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=polyketide_synthase}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: common name=ORF}}
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{{#set: common name=cyanurate degradation}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: common name=cyanuric acid degradation}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: reaction found=1}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: reaction not found=3}}
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{{#set: gene associated=Tiso_gene_10876|Tiso_gene_9394|Tiso_gene_136|Tiso_gene_12275|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_348|Tiso_gene_4191|Tiso_gene_135}}
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{{#set: completion rate=33.0}}
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{{#set: in pathway=PWY-5989}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:25, 21 March 2018

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • ORF
    • long_chain_acyl-_synthetase
    • acyl-_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 stearate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 stearoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16380&oldid=41483"