Difference between revisions of "Tiso gene 4436"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN] == * direction: ** R...")
 
(Created page with "Category:Gene == Gene Tiso_gene_4436 == * right end position: ** 8671 * transcription direction: ** NEGATIVE * left end position: ** 1933 * centisome position: ** 13.01070...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN] ==
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== Gene Tiso_gene_4436 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 8671
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* common name:
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* transcription direction:
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** polyketide_synthase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.3.10 EC-2.3.3.10]
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** 1933
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* centisome position:
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** 13.010701   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ACETYL-COA]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CO-A]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 acetoacetyl-CoA[c] '''+''' 1 H2O[c] '''+''' 1 acetyl-CoA[c] '''<=>''' 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c] '''+''' 1 H+[c] '''+''' 1 coenzyme A[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_9236]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12196]]
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* [[Tiso_gene_8563]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_14303]]
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* Reaction: [[RXN0-5462]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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== Pathways  ==
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== Pathways associated ==
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* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
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* [[PWY-7184]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7198]]
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* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
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* [[PWY-6545]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7210]]
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* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7571]], ferrichrome A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7571 PWY-7571]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8671}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10188 10188]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1933}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01978 R01978]
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{{#set: centisome position=13.010701    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P13704 P13704]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P22791 P22791]
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** [http://www.uniprot.org/uniprot/P54870 P54870]
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** [http://www.uniprot.org/uniprot/P54869 P54869]
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** [http://www.uniprot.org/uniprot/O51626 O51626]
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** [http://www.uniprot.org/uniprot/Q9CFA9 Q9CFA9]
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** [http://www.uniprot.org/uniprot/P17425 P17425]
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** [http://www.uniprot.org/uniprot/Q7LZE7 Q7LZE7]
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** [http://www.uniprot.org/uniprot/Q01581 Q01581]
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** [http://www.uniprot.org/uniprot/P54961 P54961]
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** [http://www.uniprot.org/uniprot/P54839 P54839]
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** [http://www.uniprot.org/uniprot/P54874 P54874]
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** [http://www.uniprot.org/uniprot/P54868 P54868]
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** [http://www.uniprot.org/uniprot/P54873 P54873]
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** [http://www.uniprot.org/uniprot/P93773 P93773]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: ec number=EC-2.3.3.10}}
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{{#set: gene associated=Tiso_gene_9236|Tiso_gene_8563|Tiso_gene_14303}}
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{{#set: in pathway=PWY66-367|PWY-6174|PWY-922|PWY-7391|PWY-7571|PWY-7524}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:25, 21 March 2018

Gene Tiso_gene_4436

  • right end position:
    • 8671
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1933
  • centisome position:
    • 13.010701
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4436&oldid=41490"