Difference between revisions of "HISTCYCLOHYD-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_phos...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** retinol biosynthesis
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** probable_phosphoribosyl-amp_cyclohydrolase
 +
** phosphoribosyl-amp_cyclohydrolase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.5.4.19 EC-3.5.4.19]
 
* Synonym(s):
 
* Synonym(s):
−
** vitamin A biosynthesis
 
−
** retinal biosynthesis
 
−
** retinoid biosynthesis
 
  
−
== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[RXN-12575]]
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** 1 [[WATER]][c] '''+''' 1 [[PHOSPHORIBOSYL-AMP]][c] '''=>''' 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c]
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** 13 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_11351]]
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** 1 H2O[c] '''+''' 1 1-(5-phospho-β-D-ribosyl)-AMP[c] '''=>''' 1 1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c]
−
*** [[Tiso_gene_1537]]
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−
*** [[Tiso_gene_4606]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17029]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_1538]]
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* Gene: [[Tiso_gene_5047]]
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*** [[Tiso_gene_9429]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_19778]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_4650]]
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* Gene: [[Tiso_gene_11297]]
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*** [[Tiso_gene_12686]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_10066]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_16518]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_1922]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_2556]]
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** Source: [[orthology-esiliculosus]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
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*** [[orthology-esiliculosus]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[RXN-12579]]
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== Reconstruction information  ==
−
** 23 associated gene(s):
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* Category: [[orthology]]
−
*** [[Tiso_gene_2108]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_17612]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_3215]]
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_17639]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_11437]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_8902]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_17613]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_9140]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_288]]
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* Category: [[manual]]
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*** [[Tiso_gene_17614]]
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** Source: [[manual-primary_network]]
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*** [[Tiso_gene_2109]]
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* Category: [[annotation]]
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*** [[Tiso_gene_14063]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_16817]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_14062]]
+
−
*** [[Tiso_gene_17143]]
+
−
*** [[Tiso_gene_7915]]
+
−
*** [[Tiso_gene_14109]]
+
−
*** [[Tiso_gene_5716]]
+
−
*** [[Tiso_gene_2983]]
+
−
*** [[Tiso_gene_905]]
+
−
*** [[Tiso_gene_19184]]
+
−
*** [[Tiso_gene_14064]]
+
−
*** [[Tiso_gene_906]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
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−
* [[RXN-13374]]
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−
** 4 associated gene(s):
+
−
*** [[Tiso_gene_13078]]
+
−
*** [[Tiso_gene_4653]]
+
−
*** [[Tiso_gene_7740]]
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−
*** [[Tiso_gene_13079]]
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−
** 1 reconstruction source(s) associated:
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−
*** [[annotation-in-silico_annotation]]
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−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.135-RXN 2.3.1.135-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10841 RXN-10841]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12548 RXN-12548]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12549 RXN-12549]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-33208}}
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* RHEA:
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{{#set: common name=retinol biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20049 20049]
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{{#set: common name=vitamin A biosynthesis|retinal biosynthesis|retinoid biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=3}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04037 R04037]
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{{#set: total reaction=7}}
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* UNIPROT:
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{{#set: completion rate=43.0}}
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** [http://www.uniprot.org/uniprot/P44434 P44434]
 +
** [http://www.uniprot.org/uniprot/Q9JVH6 Q9JVH6]
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** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
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** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
 +
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
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** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
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** [http://www.uniprot.org/uniprot/Q58825 Q58825]
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** [http://www.uniprot.org/uniprot/O28329 O28329]
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** [http://www.uniprot.org/uniprot/O34912 O34912]
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** [http://www.uniprot.org/uniprot/P0A5B3 P0A5B3]
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** [http://www.uniprot.org/uniprot/Q9HUB7 Q9HUB7]
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** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
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** [http://www.uniprot.org/uniprot/Q9K0H5 Q9K0H5]
 +
** [http://www.uniprot.org/uniprot/O67780 O67780]
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** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
 +
** [http://www.uniprot.org/uniprot/Q50837 Q50837]
 +
** [http://www.uniprot.org/uniprot/Q53158 Q53158]
 +
** [http://www.uniprot.org/uniprot/P45353 P45353]
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** [http://www.uniprot.org/uniprot/Q12670 Q12670]
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** [http://www.uniprot.org/uniprot/P00815 P00815]
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** [http://www.uniprot.org/uniprot/P07685 P07685]
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** [http://www.uniprot.org/uniprot/O59667 O59667]
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** [http://www.uniprot.org/uniprot/Q9X7C3 Q9X7C3]
 +
** [http://www.uniprot.org/uniprot/O82768 O82768]
 +
** [http://www.uniprot.org/uniprot/P10367 P10367]
 +
** [http://www.uniprot.org/uniprot/P06989 P06989]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=probable_phosphoribosyl-amp_cyclohydrolase}}
 +
{{#set: common name=phosphoribosyl-amp_cyclohydrolase}}
 +
{{#set: ec number=EC-3.5.4.19}}
 +
{{#set: gene associated=Tiso_gene_5047|Tiso_gene_11297}}
 +
{{#set: in pathway=HISTSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:26, 21 March 2018

Reaction HISTCYCLOHYD-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • probable_phosphoribosyl-amp_cyclohydrolase
    • phosphoribosyl-amp_cyclohydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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