Difference between revisions of "Tiso gene 8396"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOOHBUTREDUCTOISOM-RXN ACETOOHBUTREDUCTOISOM-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
(Created page with "Category:Gene == Gene Tiso_gene_8396 == * right end position: ** 5351 * transcription direction: ** NEGATIVE * left end position: ** 1088 * centisome position: ** 10.56926...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOOHBUTREDUCTOISOM-RXN ACETOOHBUTREDUCTOISOM-RXN] ==
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== Gene Tiso_gene_8396 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5351
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* common name:
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* transcription direction:
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** 2,3-Dihydroxy-3-methylbutanoate:DP+ oxidoreductase (isomerizing), chloroplast
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.86 EC-1.1.1.86]
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** 1088
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* centisome position:
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** 10.569264   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RNA-LIGASE-ATP-RXN]]
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** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[2-ACETO-2-HYDROXY-BUTYRATE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[1-KETO-2-METHYLVALERATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 (S)-2-aceto-2-hydroxybutanoate[c] '''=>''' 1 NADP+[c] '''+''' 1 (R)-2,3-dihydroxy-3-methylpentanoate[c]
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* Reaction: [[RXN-17925]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-17926]]
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* [[Tiso_gene_10173]]
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** Source: [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-17927]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
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== Pathways associated ==
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5351}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13493 13493]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: left end position=1088}}
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** [http://www.uniprot.org/uniprot/P06168 P06168]
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{{#set: centisome position=10.569264    }}
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** [http://www.uniprot.org/uniprot/P44822 P44822]
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{{#set: reaction associated=RNA-LIGASE-ATP-RXN|RXN-17925|RXN-17926|RXN-17927}}
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** [http://www.uniprot.org/uniprot/O25097 O25097]
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** [http://www.uniprot.org/uniprot/Q02138 Q02138]
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** [http://www.uniprot.org/uniprot/Q57179 Q57179]
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** [http://www.uniprot.org/uniprot/Q9JTI3 Q9JTI3]
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** [http://www.uniprot.org/uniprot/Q9PHN5 Q9PHN5]
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** [http://www.uniprot.org/uniprot/P05793 P05793]
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** [http://www.uniprot.org/uniprot/P38674 P38674]
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** [http://www.uniprot.org/uniprot/Q59500 Q59500]
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** [http://www.uniprot.org/uniprot/Q01292 Q01292]
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** [http://www.uniprot.org/uniprot/Q05758 Q05758]
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** [http://www.uniprot.org/uniprot/O82043 O82043]
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** [http://www.uniprot.org/uniprot/P78827 P78827]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=2,3-Dihydroxy-3-methylbutanoate:DP+ oxidoreductase (isomerizing), chloroplast}}
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{{#set: ec number=EC-1.1.1.86}}
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{{#set: gene associated=Tiso_gene_10173}}
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{{#set: in pathway=PWY-5103|ILEUSYN-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:26, 21 March 2018

Gene Tiso_gene_8396

  • right end position:
    • 5351
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1088
  • centisome position:
    • 10.569264
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8396&oldid=41577"