Difference between revisions of "Tiso gene 10912"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10912 == * right end position: ** 7761 * transcription direction: ** POSITIVE * left end position: ** 749 * centisome position: ** 9.127468...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] ==
+
== Gene Tiso_gene_10912 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 7761
−
* common name:
+
* transcription direction:
−
** transketolase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
+
** 749
 +
* centisome position:
 +
** 9.127468   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[3.1.3.16-RXN]]
−
** 1 [[XYLULOSE-5-PHOSPHATE]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[FRUCTOSE-6P]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 D-xylulose 5-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 &beta;-D-fructofuranose 6-phosphate[c]
+
** Source: [[orthology-esiliculosus]]
−
 
+
== Pathways associated ==
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_11559]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5008]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
−
** '''8''' reactions found over '''12''' reactions in the full pathway
+
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
+
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=7761}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=749}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
+
{{#set: centisome position=9.127468    }}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
+
{{#set: reaction associated=3.1.3.16-RXN}}
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P22976 P22976]
+
−
** [http://www.uniprot.org/uniprot/P29401 P29401]
+
−
** [http://www.uniprot.org/uniprot/P33570 P33570]
+
−
** [http://www.uniprot.org/uniprot/P21725 P21725]
+
−
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
+
−
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
+
−
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
+
−
** [http://www.uniprot.org/uniprot/P21726 P21726]
+
−
** [http://www.uniprot.org/uniprot/P47312 P47312]
+
−
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
+
−
** [http://www.uniprot.org/uniprot/P43757 P43757]
+
−
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
+
−
** [http://www.uniprot.org/uniprot/P45694 P45694]
+
−
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
+
−
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
+
−
** [http://www.uniprot.org/uniprot/P34736 P34736]
+
−
** [http://www.uniprot.org/uniprot/P33315 P33315]
+
−
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
+
−
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
+
−
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
+
−
** [http://www.uniprot.org/uniprot/P46708 P46708]
+
−
** [http://www.uniprot.org/uniprot/P75611 P75611]
+
−
** [http://www.uniprot.org/uniprot/P73282 P73282]
+
−
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
+
−
** [http://www.uniprot.org/uniprot/O20250 O20250]
+
−
** [http://www.uniprot.org/uniprot/O78327 O78327]
+
−
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
+
−
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
+
−
** [http://www.uniprot.org/uniprot/P23254 P23254]
+
−
** [http://www.uniprot.org/uniprot/P27302 P27302]
+
−
** [http://www.uniprot.org/uniprot/P29277 P29277]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=transketolase}}
+
−
{{#set: ec number=EC-2.2.1.1}}
+
−
{{#set: gene associated=Tiso_gene_11559|Tiso_gene_5008}}
+
−
{{#set: in pathway=PWY-6901|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:26, 21 March 2018

Gene Tiso_gene_10912

  • right end position:
    • 7761
  • transcription direction:
    • POSITIVE
  • left end position:
    • 749
  • centisome position:
    • 9.127468
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10912&oldid=41646"