Difference between revisions of "PWY-7724"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl-CoA ligase ** polyke...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7724 PWY-7724] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-3...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7724 PWY-7724] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** octanoyl-CoA ligase
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** icosapentaenoate biosynthesis III (8-desaturase, mammals)
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** polyketide_synthase
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** ORF
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
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** eicosapentaenoic acid biosynthesis III
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** eicosapentaenoate biosynthesis III (metazoa)
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** iicosapentaenoic acid biosynthesis III
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''7''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-195]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-196]][c] '''+''' 1 [[AMP]][c]
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* [[LINOLENOYL-RXN]]
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* With common name(s):
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** 9 associated gene(s):
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 octanoate[c] '''=>''' 1 diphosphate[c] '''+''' 1 octanoyl-CoA[c] '''+''' 1 AMP[c]
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*** [[Tiso_gene_4191]]
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*** [[Tiso_gene_135]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_348]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_7855]]
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* [[Tiso_gene_9394]]
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*** [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_500]]
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***EC-NUMBER
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*** [[Tiso_gene_13394]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_136]]
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***EC-NUMBER
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*** [[Tiso_gene_9394]]
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** [[pantograph]]-[[esiliculosus]]
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_4191]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[RXN-12994]]
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***EC-NUMBER
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** 3 associated gene(s):
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* [[Tiso_gene_135]]
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*** [[Tiso_gene_9885]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_13083]]
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***EC-NUMBER
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*** [[Tiso_gene_9871]]
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* [[Tiso_gene_7855]]
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** 3 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_348]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[RXN-12997]]
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***EC-NUMBER
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** 0 associated gene:
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** EXPERIMENTAL_ANNOTATION
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** 1 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_500]]
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* [[RXN-13001]]
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** IN-SILICO_ANNOTATION
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** 0 associated gene:
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***EC-NUMBER
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_136]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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* [[RXN-13441]]
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***EC-NUMBER
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** 0 associated gene:
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* [[Tiso_gene_10876]]
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** 1 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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== Reaction(s) not found ==
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* [[Tiso_gene_13394]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13429 RXN-13429]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17106 RXN-17106]
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-33208}}
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{{#set: common name=octanoyl-CoA ligase}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=icosapentaenoate biosynthesis III (8-desaturase, mammals)}}
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{{#set: common name=ORF}}
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{{#set: common name=eicosapentaenoic acid biosynthesis III|eicosapentaenoate biosynthesis III (metazoa)|iicosapentaenoic acid biosynthesis III}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: reaction found=5}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: total reaction=7}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: completion rate=71.0}}
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{{#set: gene associated=Tiso_gene_9394|Tiso_gene_4191|Tiso_gene_135|Tiso_gene_7855|Tiso_gene_348|Tiso_gene_500|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_13394}}
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{{#set: in pathway=PWY-6920|P221-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:26, 21 March 2018

Pathway PWY-7724

  • taxonomic range:
  • common name:
    • icosapentaenoate biosynthesis III (8-desaturase, mammals)
  • Synonym(s):
    • eicosapentaenoic acid biosynthesis III
    • eicosapentaenoate biosynthesis III (metazoa)
    • iicosapentaenoic acid biosynthesis III

Reaction(s) found

5 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7724&oldid=41649"