Difference between revisions of "RXN-18200"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18200 RXN-18200] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydrogenas...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18200 RXN-18200] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** coproporphyrinogen-iii_oxidase
+
** 3-isopropylmalate dehydrogenase
−
** coproporphyrinogen_iii_oxidase_chloroplast
+
−
** coproporphyrinogen_oxidase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
+
** 1 [[NAD]][c] '''+''' 1 [[CPDQT-40]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-19487]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''+''' 1 oxygen[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 H2O[c] '''+''' 2 CO2[c]
+
** 1 NAD+[c] '''+''' 1 3-(7'-methylthio)heptylmalate[c] '''<=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 3-isopropyl-10-(methylthio)-2-oxodecanoate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2246]]
+
* Gene: [[Tiso_gene_2920]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
+
*** Assignment: EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2247]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_3671]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_13365]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13364]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[PWYQT-4450]], aliphatic glucosinolate biosynthesis, side chain elongation cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4450 PWYQT-4450]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''10''' reactions found over '''30''' reactions in the full pathway
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
+
{{#set: common name=3-isopropylmalate dehydrogenase}}
−
* LIGAND-RXN:
+
{{#set: gene associated=Tiso_gene_2920}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
+
{{#set: in pathway=PWYQT-4450}}
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
+
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
+
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
+
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
+
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
+
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
+
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
+
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
+
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
+
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
+
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
+
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
+
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
+
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
+
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
+
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
+
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
+
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
+
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
+
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
+
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
+
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
+
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=coproporphyrinogen-iii_oxidase}}
+
−
{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
+
−
{{#set: common name=coproporphyrinogen_oxidase}}
+
−
{{#set: ec number=EC-1.3.3.3}}
+
−
{{#set: gene associated=Tiso_gene_2246|Tiso_gene_2247|Tiso_gene_3671|Tiso_gene_13365|Tiso_gene_13364}}
+
−
{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:27, 21 March 2018

Reaction RXN-18200

  • direction:
    • REVERSIBLE
  • common name:
    • 3-isopropylmalate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NAD+[c] + 1 3-(7'-methylthio)heptylmalate[c] <=> 1 H+[c] + 1 NADH[c] + 1 3-isopropyl-10-(methylthio)-2-oxodecanoate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYQT-4450, aliphatic glucosinolate biosynthesis, side chain elongation cycle: PWYQT-4450
    • 10 reactions found over 30 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-18200&oldid=41737"