Difference between revisions of "KDPGALDOL-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDPGALDOL-RXN KDPGALDOL-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDPGALDOL-RXN KDPGALDOL-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** tRNA methylation (yeast)
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** [http://enzyme.expasy.org/EC/4.1.2.55 EC-4.1.2.55]
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** [http://enzyme.expasy.org/EC/4.1.2.14 EC-4.1.2.14]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''15''' reactions in the full pathway
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* With identifiers:
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* [[RXN-11856]]
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** 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_3065]]
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** 1 2-dehydro-3-deoxy-D-gluconate 6-phosphate[c] '''=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 pyruvate[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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* [[RXN-12375]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_12620]]
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*** [[Tiso_gene_9360]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_16307]]
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
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*** [[annotation-in-silico_annotation]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-7310]], D-glucosaminate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7310 PWY-7310]
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* [[RXN-12376]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** 2 associated gene(s):
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* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6507 PWY-6507]
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*** [[Tiso_gene_9360]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_16307]]
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* [[GALACTUROCAT-PWY]], D-galacturonate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROCAT-PWY GALACTUROCAT-PWY]
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** 2 reconstruction source(s) associated:
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** '''2''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff pathway I: [http://metacyc.org/META/NEW-IMAGE?object=ENTNER-DOUDOROFF-PWY ENTNER-DOUDOROFF-PWY]
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*** [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7562 PWY-7562]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11857 RXN-11857]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11858 RXN-11858]
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* [[PWY-7242]], D-fructuronate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7242 PWY-7242]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11859 RXN-11859]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11868 RXN-11868]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12368 RXN-12368]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12374 RXN-12374]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12461 RXN-12461]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12466 RXN-12466]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12477 RXN-12477]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12478 RXN-12478]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12479 RXN-12479]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14517 RXN-14517]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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* RHEA:
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{{#set: common name=tRNA methylation (yeast)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17089 17089]
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{{#set: reaction found=3}}
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* LIGAND-RXN:
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{{#set: total reaction=15}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
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{{#set: completion rate=20.0}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P44480 P44480]
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** [http://www.uniprot.org/uniprot/P0A955 P0A955]
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** [http://www.uniprot.org/uniprot/P00885 P00885]
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** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
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** [http://www.uniprot.org/uniprot/O25729 O25729]
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** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
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** [http://www.uniprot.org/uniprot/O83578 O83578]
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** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
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** [http://www.uniprot.org/uniprot/P50846 P50846]
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** [http://www.uniprot.org/uniprot/P38448 P38448]
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** [http://www.uniprot.org/uniprot/Q55872 Q55872]
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** [http://www.uniprot.org/uniprot/P94802 P94802]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.1.2.55}}
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{{#set: ec number=EC-4.1.2.14}}
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{{#set: gene associated=Tiso_gene_12620}}
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{{#set: in pathway=PWY-2221|PWY-7310|PWY-6507|GALACTUROCAT-PWY|ENTNER-DOUDOROFF-PWY|PWY-7562|PWY-7242}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 20:28, 21 March 2018

Reaction KDPGALDOL-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-dehydro-3-deoxy-D-gluconate 6-phosphate[c] => 1 D-glyceraldehyde 3-phosphate[c] + 1 pyruvate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-7310, D-glucosaminate degradation: PWY-7310
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6507, 4-deoxy-L-threo-hex-4-enopyranuronate degradation: PWY-6507
    • 1 reactions found over 5 reactions in the full pathway
  • GALACTUROCAT-PWY, D-galacturonate degradation I: GALACTUROCAT-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • ENTNER-DOUDOROFF-PWY, Entner-Doudoroff pathway I: ENTNER-DOUDOROFF-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7562, 3,6-anhydro-α-L-galactopyranose degradation: PWY-7562
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7242, D-fructuronate degradation: PWY-7242
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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