Difference between revisions of "RXN-5472"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5472 RXN-5472] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5472 RXN-5472] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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* common name:
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* ec number:
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** tRNA methylation (yeast)
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** [http://enzyme.expasy.org/EC/2.4.1.256 EC-2.4.1.256]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''3''' reaction(s) found
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* With identifiers:
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** [[RXN-11856]]
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** 1 [[CPD-5170]][c] '''+''' 1 [[CPD-166]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-18076]][c] '''+''' 1 [[DOLICHOLP]][c]
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** [[RXN-12375]]
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* With common name(s):
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** [[RXN-12376]]
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** 1 α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl β-D-glucosyl phosphate[c] '''=>''' 1 H+[c] '''+''' 1 α-D-Glc-(1→2)-α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl phosphate[c]
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== Reaction(s) not found ==
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* '''12''' reaction(s) not found
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== Genes associated with this reaction  ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11868 RXN-11868]
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Genes have been associated with this reaction based on different elements listed below.
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12374 RXN-12374]
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* Gene: [[Tiso_gene_15050]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12466 RXN-12466]
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** Source: [[orthology-esiliculosus]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11859 RXN-11859]
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== Pathways  ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11858 RXN-11858]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-11857 RXN-11857]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12478 RXN-12478]
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== Reconstruction information  ==
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12479 RXN-12479]
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* Category: [[orthology]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12368 RXN-12368]
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** Source: [[orthology-esiliculosus]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12477 RXN-12477]
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*** Tool: [[pantograph]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-14517 RXN-14517]
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* Category: [[annotation]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12461 RXN-12461]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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* RHEA:
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{{#set: common name=tRNA methylation (yeast)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29546 29546]
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{{#set: reaction found=3}}
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* LIGAND-RXN:
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{{#set: reaction not found=12}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06264 R06264]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.4.1.256}}
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{{#set: gene associated=Tiso_gene_15050}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:28, 21 March 2018

Reaction RXN-5472

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] + 1 a dolichyl β-D-glucosyl phosphate[c] => 1 H+[c] + 1 α-D-Glc-(1→2)-α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] + 1 a dolichyl phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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