Difference between revisions of "Tiso gene 8041"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5472 RXN-5472] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Gene == Gene Tiso_gene_8041 == * right end position: ** 3759 * transcription direction: ** NEGATIVE * left end position: ** 1 * centisome position: ** 9.450903500...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5472 RXN-5472] ==
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== Gene Tiso_gene_8041 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3759
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.4.1.256 EC-2.4.1.256]
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** NEGATIVE
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* left end position:
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** 1
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* centisome position:
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** 9.450903500e-3
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[VALINE--TRNA-LIGASE-RXN]]
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** 1 [[CPD-166]][c] '''+''' 1 [[CPD-5170]][c] '''=>''' 1 [[DOLICHOLP]][c] '''+''' 1 [[CPD-18076]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a dolichyl β-D-glucosyl phosphate[c] '''+''' 1 α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''=>''' 1 a dolichyl phosphate[c] '''+''' 1 α-D-Glc-(1→2)-α-D-Glc-(1→3)-α-D-Glc-(1→3)-α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→6)]-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 H+[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_15050]]
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* [[TRNA-CHARGING-PWY]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3759}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29546 29546]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06264 R06264]
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{{#set: centisome position=9.450903500e-3}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=VALINE--TRNA-LIGASE-RXN}}
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{{#set: ec number=EC-2.4.1.256}}
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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{{#set: gene associated=Tiso_gene_15050}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:28, 21 March 2018

Gene Tiso_gene_8041

  • right end position:
    • 3759
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1
  • centisome position:
    • 9.450903500e-3
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8041&oldid=41819"