Difference between revisions of "RXN-16659"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12575 CPD-12575] == * smiles: ** C(O)C1(C(O)C(O)C(O)C(O1)OP(OP(=O)([O-])OCC2(OC(C(O)C(O)2)N...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] == * direction: ** LEFT-TO-RIGHT * common name: ** peptidoglycan transpeptidas...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12575 CPD-12575] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16659 RXN-16659] ==
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* smiles:
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* direction:
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** C(O)C1(C(O)C(O)C(O)C(O1)OP(OP(=O)([O-])OCC2(OC(C(O)C(O)2)N3(C=CC(=O)NC(=O)3)))([O-])=O)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=HSCJRCZFDFQWRP-JZMIEXBBSA-L
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* common name:
 
* common name:
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** UDP-α-D-glucose
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** peptidoglycan transpeptidase (Gram-negative bacteria)
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* molecular weight:
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** beta-lactamase
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** 564.289   
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* ec number:
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** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
 
* Synonym(s):
 
* Synonym(s):
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** UDPG
 
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** UDP-glucose
 
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** UDP-D-glucose
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-1223]]
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* With identifiers:
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* [[TREHALOSE6PSYN-RXN]]
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** 1 [[CPD-17927]][c] '''+''' 1 [[CPD-17931]][c] '''=>''' 1 [[D-ALANINE]][c] '''+''' 1 [[CPD-17932]][c]
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* [[RXN-8228]]
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* With common name(s):
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* [[13-BETA-GLUCAN-SYNTHASE-RXN]]
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** 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] '''+''' 1 a peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] '''=>''' 1 D-alanine[c] '''+''' 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c]
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* [[RXN-7828]]
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* [[RXN-16648]]
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== Genes associated with this reaction  ==
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* [[UG6PGTn]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15117]]
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* Gene: [[Tiso_gene_18870]]
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* [[UG6PGT]]
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** Source: [[annotation-in-silico_annotation]]
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* [[CELLULOSE-SYNTHASE-UDP-FORMING-RXN]]
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*** Assignment: EC-NUMBER
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* [[UDPGtni]]
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== Pathways  ==
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* [[2.4.1.117-RXN]]
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* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1586 PWY0-1586]
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* [[SUCROSE-PHOSPHATE-SYNTHASE-RXN]]
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** '''2''' reactions found over '''12''' reactions in the full pathway
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== Reaction(s) known to produce the compound ==
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== Reconstruction information  ==
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* [[UDPGtni]]
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* Category: [[annotation]]
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* [[UG1PUT]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) of unknown directionality ==
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*** Tool: [[pathwaytools]]
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* [[UG4E]]
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* [[GALACTURIDYLYLTRANS-RXN]]
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* [[GLUC1PURIDYLTRANS-RXN]]
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* [[UDPGLUCEPIM-RXN]]
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== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00029 C00029]
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{{#set: common name=peptidoglycan transpeptidase (Gram-negative bacteria)}}
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* CHEMSPIDER:
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{{#set: common name=beta-lactamase}}
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** [http://www.chemspider.com/Chemical-Structure.10239191.html 10239191]
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{{#set: ec number=EC-3.4.16.4}}
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* CHEBI:
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{{#set: gene associated=Tiso_gene_18870}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58885 58885]
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{{#set: in pathway=PWY0-1586}}
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* BIGG : udpg
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{{#set: reconstruction category=annotation}}
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* PUBCHEM:
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=16667346 16667346]
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: smiles=C(O)C1(C(O)C(O)C(O)C(O1)OP(OP(=O)([O-])OCC2(OC(C(O)C(O)2)N3(C=CC(=O)NC(=O)3)))([O-])=O)}}
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{{#set: inchi key=InChIKey=HSCJRCZFDFQWRP-JZMIEXBBSA-L}}
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{{#set: common name=UDP-α-D-glucose}}
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{{#set: molecular weight=564.289    }}
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{{#set: common name=UDPG|UDP-glucose|UDP-D-glucose}}
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{{#set: consumed by=RXN-1223|TREHALOSE6PSYN-RXN|RXN-8228|13-BETA-GLUCAN-SYNTHASE-RXN|RXN-7828|RXN-16648|UG6PGTn|RXN-15117|UG6PGT|CELLULOSE-SYNTHASE-UDP-FORMING-RXN|UDPGtni|2.4.1.117-RXN|SUCROSE-PHOSPHATE-SYNTHASE-RXN}}
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{{#set: produced by=UDPGtni|UG1PUT}}
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{{#set: consumed or produced by=UG4E|GALACTURIDYLYLTRANS-RXN|GLUC1PURIDYLTRANS-RXN|UDPGLUCEPIM-RXN}}
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Latest revision as of 19:28, 21 March 2018

Reaction RXN-16659

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidoglycan transpeptidase (Gram-negative bacteria)
    • beta-lactamase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] + 1 a peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] => 1 D-alanine[c] + 1 a nascent peptidoglycan with D,D cross-links (meso-diaminopimelate containing)[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1586, peptidoglycan maturation (meso-diaminopimelate containing): PWY0-1586
    • 2 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16659&oldid=41849"