Difference between revisions of "Tiso gene 12360"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
(Created page with "Category:Gene == Gene Tiso_gene_12360 == * right end position: ** 1966 * transcription direction: ** POSITIVE * left end position: ** 126 * centisome position: ** 1.772152...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] ==
+
== Gene Tiso_gene_12360 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 1966
−
* common name:
+
* transcription direction:
−
** ornithine_cyclodeaminase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/4.3.1.12 EC-4.3.1.12]
+
** 126
 +
* centisome position:
 +
** 1.772152   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[NAD+-ADP-RIBOSYLTRANSFERASE-RXN]]
−
** 1 [[L-ORNITHINE]][c] '''=>''' 1 [[PRO]][c] '''+''' 1 [[AMMONIUM]][c]
+
−
* With common name(s):
+
−
** 1 L-ornithine[c] '''=>''' 1 L-proline[c] '''+''' 1 ammonium[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_1843]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17134]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[ORN-AMINOPENTANOATE-CAT-PWY]], L-ornithine degradation I (L-proline biosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=ORN-AMINOPENTANOATE-CAT-PWY ORN-AMINOPENTANOATE-CAT-PWY]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=1966}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24368 24368]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=126}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00671 R00671]
+
{{#set: centisome position=1.772152    }}
−
* UNIPROT:
+
{{#set: reaction associated=NAD+-ADP-RIBOSYLTRANSFERASE-RXN}}
−
** [http://www.uniprot.org/uniprot/Q59701 Q59701]
+
−
** [http://www.uniprot.org/uniprot/P09773 P09773]
+
−
** [http://www.uniprot.org/uniprot/P33728 P33728]
+
−
** [http://www.uniprot.org/uniprot/O68052 O68052]
+
−
** [http://www.uniprot.org/uniprot/Q9WWA2 Q9WWA2]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ornithine_cyclodeaminase}}
+
−
{{#set: ec number=EC-4.3.1.12}}
+
−
{{#set: gene associated=Tiso_gene_1843|Tiso_gene_17134}}
+
−
{{#set: in pathway=ORN-AMINOPENTANOATE-CAT-PWY|ARG-GLU-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:32, 21 March 2018

Gene Tiso_gene_12360

  • right end position:
    • 1966
  • transcription direction:
    • POSITIVE
  • left end position:
    • 126
  • centisome position:
    • 1.772152
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12360&oldid=42193"