Difference between revisions of "ORNITHINE-CYCLODEAMINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11059 RXN-11059] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11059 RXN-11059] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ornithine_cyclodeaminase
 
* ec number:
 
* ec number:
** [http://enzyme.expasy.org/EC/2.8.2.1 EC-2.8.2.1]
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** [http://enzyme.expasy.org/EC/4.3.1.12 EC-4.3.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[PAPS]][c] '''+''' 1 [[N-ACETYL-SEROTONIN]][c] '''=>''' 1 [[CPD-12017]][c] '''+''' 1 [[3-5-ADP]][c] '''+''' 1 [[PROTON]][c]
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** 1 [[L-ORNITHINE]][c] '''=>''' 1 [[PRO]][c] '''+''' 1 [[AMMONIUM]][c]
 
* With common name(s):
 
* With common name(s):
** 1 3'-phosphoadenylyl-sulfate[c] '''+''' 1 N-acetyl-serotonin[c] '''=>''' 1 N-acetyl-serotonin sulfate[c] '''+''' 1 adenosine 3',5'-bisphosphate[c] '''+''' 1 H+[c]
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** 1 L-ornithine[c] '''=>''' 1 L-proline[c] '''+''' 1 ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* Gene: [[Tiso_gene_5505]]
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* Gene: [[Tiso_gene_1843]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17134]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
* [[PWY-6398]], melatonin degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6398 PWY-6398]
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* [[ORN-AMINOPENTANOATE-CAT-PWY]], L-ornithine degradation I (L-proline biosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=ORN-AMINOPENTANOATE-CAT-PWY ORN-AMINOPENTANOATE-CAT-PWY]
** '''5''' reactions found over '''5''' reactions in the full pathway
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24368 24368]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00671 R00671]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q59701 Q59701]
 +
** [http://www.uniprot.org/uniprot/P09773 P09773]
 +
** [http://www.uniprot.org/uniprot/P33728 P33728]
 +
** [http://www.uniprot.org/uniprot/O68052 O68052]
 +
** [http://www.uniprot.org/uniprot/Q9WWA2 Q9WWA2]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: ec number=EC-2.8.2.1}}
+
{{#set: common name=ornithine_cyclodeaminase}}
{{#set: gene associated=Tiso_gene_5505}}
+
{{#set: ec number=EC-4.3.1.12}}
{{#set: in pathway=PWY-6398}}
+
{{#set: gene associated=Tiso_gene_1843|Tiso_gene_17134}}
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=ORN-AMINOPENTANOATE-CAT-PWY|ARG-GLU-PWY}}
{{#set: reconstruction source=orthology-esiliculosus}}
+
{{#set: reconstruction category=orthology|annotation}}
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:32, 21 March 2018

Reaction ORNITHINE-CYCLODEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ornithine_cyclodeaminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-ornithine[c] => 1 L-proline[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links